BAC Information

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BAC

Clone NameMSMg01-060D06
Chromosome9 (Build37)
Map Location 81,300,620 - 81,301,012
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666534
Downstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060D06.T7 (MSMg01no060_d06.b1)MSMg01-060D06.TJ (MSMg01no060_d06.g1)
ACCAG286701AG286702
length957700
length of high quality
(start - end)
---390 (69 - 458)
definitionCHROMAT_FILE: MSMg01no060_d06.b1 PHD_FILE: MSMg01no060_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:53 2005CHROMAT_FILE: MSMg01no060_d06.g1 PHD_FILE: MSMg01no060_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTAAGCATCTCCTCACTTGGGACTGACGGGCTTGGGTTGGGTACGGT
TTCTCGGAGGGGGGAGCCCGGCGGGGGGTTTCGCGCTGAGTGGTCTTGTT
TTATTTCTCGGAGGTTGGGGATGCCGGGGCAGGCAGCTTTACTCGCTGGG
CTCCCTGGCGGAACAGAGGTGGCGCCACCAAAAAACCGGGTCCTGCGAGG
CCCCGCTTTGGCGTTTCCGCGCGTGGGCGTGCAGTTTAGTCTCGGGTTTG
TGTCCGCGTATTGTGTTTTCCCCTTTCTTTTTTGTATTCCTTTTTTCTTT
TTTGAACCTCCTTGTTTATTCTCTGTATCTTTTGCGTGGGTGCGCGGGGC
ACGTGGCGCCATGCGCACGTTAGCTTTACTTATATAAATTAAATTGTTGG
GAATATTTATTAATCAAACTCTACTTCCAGTTGCGTGTCCCTCTTCGTGA
CCNCCTTCCGTGNCCGGGCTTCCCCATTTCCAATTCCTATTCAATTTTGC
GTATCCGAGGGCTGTTTTTTTTTAATAAAAATTTTTGTCGCGCCGGTCGC
CCCGTTAAGAAAAAGGGGAAAGGTTCAACGATCTAATTAAGTGGTGGCTC
AGAGGAAAGGGGGAAAAATTCGCCCCCGCCTTGAGAAAATTTATCATTCT
CCACGCTTGTTTGNGTCCCTCTTGCAGCAAAATAAAAAGAAATTTTTGTT
TGCGTTAGTTTCGAACTTTTTCTTATTTCAGTGGTGAAGGNGCTCTTTTC
CCTCCCGGGTTCCGTTGAGGAATACACATATTTATCCGTAGTTTTCCCCG
TTTTGATTCACCATATCTTCCCAACATTAAANNNCAAACCTCGCCATCTC
TTTGCCCTGCGCGGGGTAATTATGAGCTGACGTTTGCACAACAGCCACTA
TAGGCGCGGCGTCGCGGACTGGCGGTAGCGTGGAATAGAATAATATTGGC
TAGTCTN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAATAAAGGTGACAAAGGGACAAAGACCCCC
TTTAATGTACTGTGATGGAAAAATGCAAGTAATCATTTAATCCTCTGAAA
AATTCTAGAAAATTGAGTCTTATGGTGAGAAGACTGGTAGATTAAAAAAA
CACTGAGAAGAAGTTGAATACTTTTCTAATTATTTTTGTCAAAGATTAAT
TAGCATATATTTCTAGTACAGTTTGCCTAATTGTAAATCAACATGTATAT
ATTTTATTAGAAACTATTTCTGACCACAGAGTTTTGCAATATTCAAGTAC
TGACTTCATACTGCTTACTTGTATACAGGTTTGTAAATTATTCCTTTACA
ATATAAATATCTCTTATTTCTAATTAAATACTTCTTTTCCAGAAAGTATT
TATTTGTAAAGACAATCAAGGTTCAGTGAAACTATTTCAGGCTCTTAAGA
AAAATGATTAGCATGTAGATAGCAGTCCCAAGTTCATTAATATGTGCTCG
GAGACCCTAATATCCCAAACTTTTTTTTAAAGTGCCCCTGAGGGGCATGT
TGCGAATTGCGGTCCTGCTGCCGCTGGGGCCATGTTTGGTTCCCTTGACC
TGCGTCACCAGTAAAGGTCATATGGATGCATGCCCGTGCCCTATGCTGCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_d06.g1 MSMg01no060_d06.g1 CHROMAT_FILE:
MSMg01no060_d06.g1 PHD_FILE: MSMg01no060_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:53 2005
         (390 letters)



>mm_chr9_81300420_81301212
          Length = 793

 Score =  714 bits (369), Expect = 0.0
 Identities = 386/393 (98%), Gaps = 3/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaataaaggtgacaaagggacaaagaccccctttaatgtactgtgatggaaaaatgcaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaataatggtgacaaagggacaaagaccccctttaatgtactgtgatggaaaaatgcaa 260

                                                                       
Query: 61  gtaatcatttaatcctctgaaaaattctagaaaattgagtcttatggtgagaagactggt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatcatttaattctctgaaaaattctagaaaattgagtcttatggtgagaagactggt 320

                                                                       
Query: 121 agatt---aaaaaaacactgagaagaagttgaatacttttctaattatttttgtcaaaga 177
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttaaaaaaaaacactgagaagaagttgaatacttttctaattatttttgtcaaaga 380

                                                                       
Query: 178 ttaattagcatatatttctagtacagtttgcctaattgtaaatcaacatgtatatatttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattagcatatatttctagtacagtttgcctaattgtaaatcaacatgtatatatttt 440

                                                                       
Query: 238 attagaaactatttctgaccacagagttttgcaatattcaagtactgacttcatactgct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagaaactatttctgaccacagagttttgcaatattcaagtactgacttcatactgct 500

                                                                       
Query: 298 tacttgtatacaggtttgtaaattattcctttacaatataaatatctcttatttctaatt 357
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttgtatacaggtttataagttattcctttacaatataaatatctcttatttctaatt 560

                                            
Query: 358 aaatacttcttttccagaaagtatttatttgta 390
           |||||||||||||||||||||||||||||||||
Sbjct: 561 aaatacttcttttccagaaagtatttatttgta 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 793
Length adjustment: 9
Effective length of query: 381
Effective length of database: 784
Effective search space:   298704
Effective search space used:   298704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)