BAC Information

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BAC

Clone NameMSMg01-060E07
Chromosome9 (Build37)
Map Location 100,027,105 - 100,027,417
singlet/doubletsinglet
Overlap genenone
Upstream genePik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060E07.T7 (MSMg01no060_e07.b1)MSMg01-060E07.TJ (MSMg01no060_e07.g1)
ACCAG286751AG286752
length710786
length of high quality
(start - end)
414 (43 - 456)127 (75 - 201)
definitionCHROMAT_FILE: MSMg01no060_e07.b1 PHD_FILE: MSMg01no060_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:58 2005CHROMAT_FILE: MSMg01no060_e07.g1 PHD_FILE: MSMg01no060_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCTTTCTTATCCTAGAACTCGACGTTCATGGACCAGGCTTGTTACAA
CTTTAATAACTGAAGAAATCAAATAATTACCTATGTCTGTGTGGTCGCAG
AAAAATTTCTAGAGAATAAGAAAATCTTGTGCTTCCATGTTTAAATCAAG
TACCAGCCAAAGCTTTAAAGAAAAGCTGATAAAACTGCTCATGAGTACAG
ATTTTATCTCTCCTTAACTCTGAGTACGAGAGCAAGACCGGCTGCTGACT
TCCTGGGCAATGAGGTAAGGGGTGAGACTGGCTGCTGACTTCTTGGGCAA
TGAGGTAAGGGGTGAGACTGGCTGCTGACTTCTTGGGCAATGAGGTAAGG
GGTGTGTGTTACCCCACCCCGAAGATTCCGGATTTCATTTAGCTCACAGT
TTGTGAGGTTGAAGAGTGAATACGTCCCTGGTAGCATATAGCTCATTCAC
ATTTGCTGCTCTGCCCTGTTTCTATACATCTTTGTTTTATTTTGTCCCTG
CCTACAGCTCATGCCCAAGCCCCTTTGTTTCCTTCTCCCCCAAACTTCCT
TTACTCGCTTTTTATCTAAATTTTTCTATTGTCGCTCTTCTCCTTTTTCT
CATCTTTTTTTTTACACCCCCTCTTATCTTTCTTTTACGTACATTTTTCT
TTTCTTCTCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGAGATAGCCTCTCTGGCT
ATCTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATG
TATGCTTGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGT
GCAGAGTGTGCATCCCGTCACTTTTGCCATGGTAGCGGAGGCTTTTGTTT
GCTTGTAGGCAGGACTGTCTCCTCATATCCTTTTTTTCGTTTGATTTTAT
ATTTTGTTGTATTTGTTTTTTGTCTCTTAAGGTTATAATCTGTCTTGAAC
ATTGCTTGCCTCTTTGGCTCTCTTCCTCTTCTTTTTTTCTGTTTTTTTTT
TTCTTTTTTTTTTTTTTCAACATTCCTTTTCAAGCACAAAGATTTTTTCT
GTTTCTTTCCCCTCCCCACCCTTTTGTATGTCTCCTCCGCCTCTTGTCTC
CTTCTGTACATCTCTTTTTCTGCTCTGTTTTTTTCTTTCTACATGACTTT
TTTCTTTTTTGTTTGTTTATTCTCTCCCTCCTTTTTTTTGCCCCTCCTTT
ATTTTCCTTTTTTTTTCCTTTTGTTTCTCTCGGCCTTATCATCTAATTCA
TTGCCCTTGTTTCTCTCTCCTTTCCTTTGTTTCCCACCCTTCTCCCTTTA
TTCTGTACCACTTCTACTTCTTTTCTCTTGCTTTCTTAACCCTCTTTGTT
CAACTCATTTTATTTTTTTTTTTTAATTTGGTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_e07.b1 MSMg01no060_e07.b1 CHROMAT_FILE:
MSMg01no060_e07.b1 PHD_FILE: MSMg01no060_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:58 2005
         (414 letters)



>mm_chr9_100026898_100027711
          Length = 814

 Score =  559 bits (289), Expect = e-163
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctttcttatcctagaactcgacgttcatggaccaggcttgttacaactttaataa 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctttcttattctagaactcgacgttcatggaccaggcttgttacaactttaataa 461

                                                                       
Query: 68  ctgaagaaatcaaataattacctatgtctgtgtggtcgcagaaaaatttctagagaataa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctgaagaaatcaaataattacctatgtctgtgtggtcgcagaaaaatttctagagaataa 401

                                                                       
Query: 128 gaaaatcttgtgcttccatgtttaaatcaagtaccagccaaagctttaaagaaaagctga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaaatcttgtgcttccatgtttaaatcaagtaccagccaaagctttaaagaaaagctga 341

                                                                       
Query: 188 taaaactgctcatgagtacagattttatctctccttaactctgagtacgagagcaagacc 247
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 340 taaaactgctcacgagtacagattttatctctccttaactctgagtacgagagcaagact 281

                                                                       
Query: 248 ggctgctgacttcctgggcaatgaggtaaggggtgagactggctgctgacttcttgggca 307
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 280 ggctgctgacttcttgggcaatgaggtaaggggcgagactggctgctgacttcatgggca 221

                        
Query: 308 atgaggtaagggg 320
           |||||||||||||
Sbjct: 220 atgaggtaagggg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)