BAC Information

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BAC

Clone NameMSMg01-060J03
Chromosome9 (Build37)
Map Location 34,611,424 - 34,611,791
singlet/doubletsinglet
Overlap geneKirrel3
Upstream genenone
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J03.T7 (MSMg01no060_j03.b1)MSMg01-060J03.TJ (MSMg01no060_j03.g1)
ACCAG286983AG286984
length728747
length of high quality
(start - end)
373 (37 - 409)83 (121 - 203)
definitionCHROMAT_FILE: MSMg01no060_j03.b1 PHD_FILE: MSMg01no060_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:20 2005CHROMAT_FILE: MSMg01no060_j03.g1 PHD_FILE: MSMg01no060_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATC
AACGTGCACGTCTATTTCTATTTCCTTGAGTTCTACACAAACAATTTCCA
CCTCACAAGTATCTTTTGAAGTACTGTACATATGTGGCTGGATATTAAGC
TGTTCCACAAACATTTTGGATCAAAACTGCCTGGCTAGGAACGGCTACAG
CCAGAGCAATAACATGGCGTTAGAAAGAGCTGGCTTGCTCGCAGACAAGC
TTACACACATTGCCTCTGCCTCTAATGGAGTTTTGCAGAAGAGAATTGCC
TGGAAAATGGGTTTTTAAGGGTGAACTTTTGACTTGCAATGCAAGGTGGA
AGGAAGAATGGCAGACAGGAGAGAGAGATGGGCAGCCTCTGCAGAAGCGG
TTTTCCCTACCCACAGCCGAACCTGGAATGACTTCTACTTTGCTGTGATG
GCCTTAGCAAACAATTGAGCCCCTGCTTCTCTTCCACACAGTCTCTCTTC
AAGGCTACTCAGTTGTACTGATGTCTGGGTTTTGAGACCCATTTGTGGGG
TATCATGGATATTTACAGCTCGTGTGCGTGTGTGTGTATGTATGTATGTG
CGACGAAATTGTTATACACCCAACTTCTCTTCTCACCCATTTCCCATTTT
TTATTTCGTCACTTCAACTTTAAACCCCCCCCCAACTTCTTTCTTTTTTC
CCTTCCCCCCCCCCCCCCCCATTTCCTA
CCGATGCTCAGGNACCCTGGNGAATGNNNGTTCCCACCCGANGNGAANNA
NANAAGTTCCCCGACCNGCAGGGNNANNNNGGGNNNAAGGGNGGAGAANN
NNNNNNAAAGAAAAACCCCAAAAAAAAAAAAGGAAAGAAAGAGAGAGAGA
GAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAAACAAGCAAACA
ANNGAAAACAGCCCCACCCAAACAGACGGCCAAGGGAACCACGGAGACTT
TTTTTCCCTGCCAGACACCCGCAGGACAAGAGCTGGACCACAAGGCCCAC
CAGCGAGGCCCTGTTTTTTTTTTTCAGACAGCACCCAAACACCGGGCCAA
CCCAGAAACCCCCCCCCCCCCCCCAAGGGAGGAACGGANCCACCCCAGGG
CGGCCCCAGCCCCCCACCGCAGACCACCAGACCACCGACGAGGACGCAAC
ACCCCGCCCGAGGGCCCCGGNGCCNCCGAGAACACCNGCCCAGCCCCGCC
CCCCGACCACCAACCAAACCACCCCAACAGGGACGGGAGACACCACCNGA
ACACCAAACCCCGGGCGACCCGCGCCCCCACAACCCAGGCCCCCACCCCC
CCCACCCCCCGCCAACAAGGGGCACCACCACGGCGGCGGAAAGGCCACCC
CCACCACCACCCACCCGCCTCCGAGCACACCCAGAAACCGCACCGCCACC
ACCGCCCCACCCCCACCGCGCCCCGCCCACCGAACGAACCCAGGNGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j03.b1 MSMg01no060_j03.b1 CHROMAT_FILE:
MSMg01no060_j03.b1 PHD_FILE: MSMg01no060_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:20 2005
         (373 letters)



>mm_chr9_34611220_34611991
          Length = 772

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 1/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatcaacgtgcacgtctatttctatttccttgagttctacacaaacaatttcca 64
           |||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 572 gaattcaatcaaagtg-aagtctatttctatttccttgagttctacacaaacgatttcca 514

                                                                       
Query: 65  cctcacaagtatcttttgaagtactgtacatatgtggctggatattaagctgttccacaa 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cctcacaagtatctttcgaagtactgtacatatgtggctggatattaagctgttccacaa 454

                                                                       
Query: 125 acattttggatcaaaactgcctggctaggaacggctacagccagagcaataacatggcgt 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acattttgaatcaaaactgcctggctaggaacggctacagccagagcaataacatggcgt 394

                                                                       
Query: 185 tagaaagagctggcttgctcgcagacaagcttacacacattgcctctgcctctaatggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tagaaagagctggcttgctcgcagacaagcttacacacattgcctctgcctctaatggag 334

                                                                       
Query: 245 ttttgcagaagagaattgcctggaaaatgggtttttaagggtgaacttttgacttgcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttgcagaagagaattgcctggaaaatgggtttttaagggtgaacttttgacttgcaat 274

                                                                       
Query: 305 gcaaggtggaaggaagaatggcagacaggagagagagatgggcagcctctgcagaagcgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcaaggtggaaggaagaatggcagacaggagagagagatgggcagcctctgcagaagcgg 214

                    
Query: 365 ttttcccta 373
           |||||||||
Sbjct: 213 ttttcccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space:   277732
Effective search space used:   277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)