BAC Information

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BAC

Clone NameMSMg01-060J24
Chromosome9 (Build37)
Map Location 97,429,634 - 97,429,821
singlet/doubletsinglet
Overlap geneClstn2
Upstream geneLOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42
Downstream geneLOC667298, Nmnat3, Rbp1, Rbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J24.T7 (MSMg01no060_j24.b1)MSMg01-060J24.TJ (MSMg01no060_j24.g1)
ACCAG287025AG287026
length674698
length of high quality
(start - end)
---188 (127 - 314)
definitionCHROMAT_FILE: MSMg01no060_j24.b1 PHD_FILE: MSMg01no060_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:24 2005CHROMAT_FILE: MSMg01no060_j24.g1 PHD_FILE: MSMg01no060_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAAAAAAGGGGNG
GAGTGTGGTAGGTATTCCAAGATAGGCTGAAGAATGTCTTATTATTTGCT
AATACGATTGTCCAACATAATCCGTTCTGTAGATTTTCCCCCTTGTCAAG
AGCCTAAACGGGCAGACAAAAACGCAGTATTTGACTGGGTTATTTCACCG
AGCGTCTATTTCCTTTCAGCGCTATCTAATCTTGCTTTCTTCCTGAGAGG
GAATAGGGCACGGTTATAAATGTGCTCCTCTTCTTCGGGGAATCTGATAT
TTCATCCTCCTGCCTCCTGTGTACCCCCTGCCTGGACGGCGGGTCAATAA
TGAAAGGGTCTGAGAAGGAAACGGACAAGTGTGAATGTGCGAATGGGTTG
GAAAGGGGAAAAATGAAAAGTGGGGGTGATGGGGAACGCGAAAAGTGTGG
ATTGGGGTAAAAAGGTGGAAAAAAGGGTAAAAAAAAAACCTTGAACGCGG
CTGAAAGGGAACCGAAGCGGAAACACATTTACCGCCCACAGAATGACGTA
AAAGGGGAAAACAGAACAAAGGGAATGGAAACGTAAAACGGTGAAATAGT
GTGAAACCGAAAAAAGGTGAAACGGGTAAAAAAAGGAAAAATGGTCAAAA
TGGGAAAAGGGAAAAAGGGGGGAA
CTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTTGCGCAAAACAAGAAAATGATGAAATTGGCCTTCATGGGC
ATCACATTGCTTTCTTTTTGGTGCACTGAACAACAAAACACAGTAATGGT
GGTCCATTATGAAGTCCTCTATAAATAGTTGGAGATCTCCTCTGTTTAGT
CAGCAAAGGCTCACTGAGGAAAAAAGAGAGACGCTTAAGCCACCATTGCC
GTTATCACCAGTAAAGCTCTTGGTGGCTGCCACTCTCTTGTGGGTCTCCT
CATTCATTGTCTAGTGGTGAGTGTGGAGGAAAAAGCTCTGTCTGGTCCAG
ATATGCTGAGATAAGAATCCTTGCATTGTTTACTTAGCCATCAAAGAGAA
AGAACCAGTGTTGAGTGCACAGGCTTTTATTGACAAAACCAGCAGGTTGT
GTGTGTCGCCTCTAATCACTACCTTCCACTTGCTGAAACTTGGTCACAGG
GCCTTCACCCAGCCCCGGAGAGGCTGTGAAATGCAATCAACTATATACCT
GGCAGCCAAGGAAGCCCGCACTTGGTTGCCATGTAGTACTGACCTCTGCC
CCAAGGGAACGCACGCGCCTTTGCTGGTCTTTGTCTTCTATCCTCTCCTG
CCGCCCTTTTCTTCCATTCACAATCCTGGCTCTTGCCTGGTTACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j24.g1 MSMg01no060_j24.g1 CHROMAT_FILE:
MSMg01no060_j24.g1 PHD_FILE: MSMg01no060_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:24 2005
         (188 letters)



>mm_chr9_97429434_97430021
          Length = 588

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaacaacaaaacacagtaatggtggtccattatgaagtcctctataaatagttggagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgaacaacaaaacacagtaatggtggtccattatgaagtcctctataaatagttggagat 329

                                                                       
Query: 61  ctcctctgtttagtcagcaaaggctcactgaggaaaaaagagagacgcttaagccaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctcctctgtttagtcagcaaaggctcactgaggaaaaaagagagacgcttaagccaccat 269

                                                                       
Query: 121 tgccgttatcaccagtaaagctcttggtggctgccactctcttgtgggtctcctcattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgccgttatcaccagtaaagctcttggtggctgccactctcttgtgggtctcctcattca 209

                   
Query: 181 ttgtctag 188
           ||||||||
Sbjct: 208 ttgtctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)