Query= MSMg01no060_k01.b1 MSMg01no060_k01.b1 CHROMAT_FILE:
MSMg01no060_k01.b1 PHD_FILE: MSMg01no060_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:24 2005
(550 letters)
>mm_chr9_62227417_62228366
Length = 950
Score = 1009 bits (522), Expect = 0.0
Identities = 540/546 (98%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 6 gaattctcatcattcc-tcctcaaaggtggatggaaatacctggcctgatgcagaaaggg 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattctcatca-accttcctcaaaggtggatggaaatacctggcctgatgcagaaaggg 692
Query: 65 agtcagtcccctggaggctgcctgcaaaacgtattcttcattactcacaccatgtcaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agtcagtcccctggaggctgcctgcaaaacgtattcttcattactcacaccatgtcaatt 632
Query: 125 gagccaccacagaggagctggggtccacagcatctgtcctgacacattacgcccatgttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gagccaccacagaggagctggggtccacagcatctgtcctgacacattacgcccatgttc 572
Query: 185 ttgataccttcctgtaaagacatgcctgcctggcttccccatcatgaccacatagcttag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgataccttcctgtaaagacatgcctgcctggcttccccatcatgaccacatagcttag 512
Query: 245 cctgcaggagaccacctgactctgcttctgaagccagagatagctagtctaaaagagcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cctgcaggagaccacctgactctgcttctgaagccagagatagctagtctaaaagagcag 452
Query: 305 gtgtcagggtgaggtgaggcccaggtcttctcagacatgtacaagagtcactggaaccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtgtcagggtgaggtgaggcccaggtcttctcagacatgtacaagagtcactggaaccct 392
Query: 365 gccatgacgcccagatagctgatgcttgctatggagtgcaaagctgtatggctgagaaga 424
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gccatgatggcaagatagctgatgcttgctatggagtgcaaagctgtatggctgagaaga 332
Query: 425 aggtcacgcagccagtgtgccatccctggtctgacaagttttaggcaatctcatacatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggtcacgcagccagtgtgccatccctggtctgacaagttttaggcaatctcatacatga 272
Query: 485 ccgttacaaaaatgctaggagaggtttggcccaatgagcatcttgtctaagagttgacta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccgttacaaaaatgctaggagaggtttggcccaatgagcatcttgtctaagagttgacta 212
Query: 545 tgaaga 550
||||||
Sbjct: 211 tgaaga 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_k01.g1 MSMg01no060_k01.g1 CHROMAT_FILE:
MSMg01no060_k01.g1 PHD_FILE: MSMg01no060_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:24 2005
(492 letters)
>mm_chr9_62095998_62096889
Length = 892
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Plus
Query: 1 ttttgacttccttgatgatgaactgtgatggagaagcagaagctgaataaaccctttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgacttccttgatgatgaactgtgatggagaagcagaagctgaataaaccctttcct 260
Query: 61 tcccacctttcttttggcatggtatttcatcccagcaatagtccctaactaagacactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccacctttcttttggcatggtatttcatcccagcaatagtccctaactaagacactgt 320
Query: 121 tgctgtgatgacctacacggtgaaccacaatggccccctcccatcaataactaattagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgtgatgacctacacggtgaaccacaatggccccctcccatcaataactaattagga 380
Query: 181 aaatgctcttaggtttgcctacagactgggctgattgtctggagtcattttcttaatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgctcttaggtttgcctacagactgggctgattgtctggagtcattttcttaatcct 440
Query: 241 tccttccaaagactaacacttgggtcaagttgacataaaactagccagcacacactggca 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttccaaagactaacacttgtgtcaagttgacataaaactagccagcacacactggca 500
Query: 301 acaggaacaatccagaatgaagagagaggcaagaccaagacttcacgcaggcatgagaga 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 acaggaacaatccagaatgaagagagaggcaagagcaagacttcacgcaggcatgagaga 560
Query: 361 ggtgggatgtctgtgagataatgtcaagcaatctaacgtacgagtacttgaaatgccaaa 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgggatgtctgtgagataacgtcaagcaatctaacgtacgagtacttgaaatgccaaa 620
Query: 421 gaagaagatgatcgacttgatggaaaccttgtgtcacacatataaaagttcaactaactc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagaagatgatcgacttgatggaaaccttgtgtcacacatataaaagttcaactaactt 680
Query: 481 gagagcaagaga 492
||||||||||||
Sbjct: 681 gagagcaagaga 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
