BAC Information

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BAC

Clone NameMSMg01-060M22
Chromosome9 (Build37)
Map Location 5,836,987 - 5,837,269
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060M22.T7 (MSMg01no060_m22.b1)MSMg01-060M22.TJ (MSMg01no060_m22.g1)
ACCAG287165AG287166
length688716
length of high quality
(start - end)
284 (76 - 359)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no060_m22.b1 PHD_FILE: MSMg01no060_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:37 2005CHROMAT_FILE: MSMg01no060_m22.g1 PHD_FILE: MSMg01no060_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAAGAGGATCCGC
GGAAATCTTTGCTTACCACAGACCCCCATTTTTAATGGGGTTATTTGATT
TTGCTGGAGTCCATCTTCTTGACTTCTTTATACATATTGGATATTAGTCC
CCTATCTAATTTAGGATTCATAAGATCCTTTCCCATTCTGTTGGTTGCCT
GTTTGTCTTGTTGACAGTGTCTTTTGCCTTACAGAAGCTTGGCAATTTTA
GGAAGTCCCATTTGTAGATTCTTAACCTTATAGTACAAGCCATTGGTGTT
CTTTTCAGGAATATTTCTTTTTGTGTCCATAACTTCGAGACTTTTCCCCA
CTTTTTCCTCTTTTTTTTTCACTGCCTCTGGTTGTATGTGGAGTTCCTTG
ATCCACTTATACTTGAGCTTGCTACAAGGAGATGAGAATGGATCAATCCC
CATTCTTCTACAGACTAACTGATAATTATGCCAACACCATCTGTTGAAAA
TGCTGTAATTTTTTCACTGGATAGTTTTCGCTCCCTTGTCAAAGATCAAG
TGATCATTGGCGTGTGGGTTCATTTCTGGGTCCTCCACTCTATTCCCTTG
CTTTACCTGTTCTGTACTATACCCAGTTGCTTTTATCCCACCTGTTCCCG
TTTTTCTTTTTGAGGTCCCAATTGGGCTTTCCCCCCCT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCCAGCCAGACTGGGAT
CCTGCAGATCTCACATGTTCTGGATTCTGCTTCATCCTTCTATGCTGTTG
TGCAGGGGCATCTGGATACCATGAGAGGGAGGAAGCAGAAAAATTGGAAT
CACATCTAGATCTCAAAATGAATAACACATTTTAAAATTGTTTATTTATT
AGTGGGGTGTTATATTTTGTATATGTGTCATATTTCTACTTTTATAATGG
GGGTCTTAAATCAGTTCAGGTTTAGCAGAACGTGCTTTTATAAGCTGAGC
TATCTCTCTGGCCCCTAGACAAGTGTCCTTTACAACCAAATGAGTCTTTC
ACTATTTTAACTACATTAGGATCACCCAGAAAAGAGAATGCCACTACACC
AGTCCATTAATCCAACCACCCTATACCCACAGAACTCTCCCTAATAATAT
GCACTATGGCTGCTTATTCCTAGGGAATTATGAAGAGTGATTCCATCACC
CGTAACACTCAATCCTGTTGGTACTCCCGACCTGCCCTATAATTGCTGAG
GCGGACCGGACGTGGGCCCTACTTTAACGGGGAGGGGGGCGACTGAGGGG
GCGGCACTTTCGGGGAACGCGTGTATATGGGGGGGGCGTCGCCGAGTGGC
CTTGTCGCGGGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_m22.g1 MSMg01no060_m22.g1 CHROMAT_FILE:
MSMg01no060_m22.g1 PHD_FILE: MSMg01no060_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:37 2005
         (282 letters)



>mm_chr9_5836787_5837469
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccccagccagactgggatcctgcagatctcacatgttctggattctgcttcatccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atccccagccagactgggatcctgcagatctcacatgttctggattctgcttcatacttc 260

                                                                       
Query: 61  tatgctgttgtgcaggggcatctggataccatgagagggaggaagcagaaaaattggaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tatgctgttgtgcaggggcatctggataccatgagagggaggaagcagaagaattggaat 320

                                                                       
Query: 121 cacatctagatctcaaaatgaataacacattttaaaattgtttatttattagtggggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatctagatctcaaaatgaataacacattttaaaattgtttatttattagtggggtgt 380

                                                                       
Query: 181 ta-tattttgtatatgtgtcatatttctacttttataatgggggtcttaaatcagttcag 239
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tactattttgtatatgtgtcatatttctacttttataacgggggtcttaaatcagttcag 440

                                                      
Query: 240 gtttagcagaacgtgcttttataagctgagctatctctctggc 282
           ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 441 gtttagcagaaagtgcttttataagctgagccatctctctggc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)