XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
AAAGAAGATACCAATTATAACCTCCAGAATGATGGGACCATCTGATAACT
AGAGGCTGATTTCAAATCATCAAATATTGGTAGGAACATTAAGCCTTGCT
AATTTGCATAGCATCATTATCTCTAATACAAAAAACACATTTGGGAAAAA
GTGAGTGTTCTCTGGTTCACTCATGTATGAAGATGCTCACTTGGGTACCC
TGTAACAGTTACAACAGGAGGGTCTACAGATAATGGTCACATCTGCCTTG
ACATGGTGAAGACAGATACTATTATCTCTTGGATAATAAATATGAGAGAA
TATGAATTTGGCGCCTAGCCATAAGTCCTAGGAAAAACATTGTTGAAAAT
TTTCTAGAATATCGCCCATAGTGGCTTCAATAATCTACAGATACATGGTC
AAAGGGTTTCTTTTAGACTGTGAGTTAGATCAGAAATTTTCTTTTTTGGA
AAAGGCTTGCACTTTGCTCTAAGTAGCTTACAGAAATATTTTGTCATTTC
TATTTGTGTTTTATAATAGAGTTTCCTTAGATTGGGCCTGAAGAGATTAC
CAATAGGTTAGGAACAGTTTGAAATAATCTAAATATGTATATTTACATGT
AATATTATAGGCACAATAGAATTTTAAGTCACACTAATTAAATACAATTT
TAATTAAA

TTCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACCGAATGC
AGAGAAGCACCTGAAGAAAAGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGAAGAAAGAGGA
ACACTCCTCCATTATTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCTATACCTCTCCGGGGCATATATCCAGAAGATGTCCCAACCGTTAAG
AAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAGATACAGACAA
TGTGGTACATGTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAAGCAAATGGAGGGCATCATCCTGAGTGAGGTAATC
CAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAATGCA
TGACACTCAAGAAGAACGAA

Query= MSMg01no060_n23.b1 MSMg01no060_n23.b1 CHROMAT_FILE:
MSMg01no060_n23.b1 PHD_FILE: MSMg01no060_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:42 2005
         (670 letters)



>mm_chr9_91359481_91360553
          Length = 1073

 Score = 1230 bits (636), Expect = 0.0
 Identities = 659/670 (98%), Gaps = 9/670 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaaagaagataccaattataacctccagaatgatgggaccatctgataactaga 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaaagaagatatcaattataacctccagaatgatgggaccatctgataactaga 265

                                                                       
Query: 66  ggctgatttcaaatcatcaaatattggtaggaacattaagccttgctaatttgcatagca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggctgatttcaaatcatcaaatattggtaggaacattaagccttgctaatttgcatagca 325

                                                                       
Query: 126 tcattatctctaatacaaaaaacacatttgggaaaaagtgagtgttctctggttcactca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcattatctctaatacaaaaaacacatttgggaaaaagtgagtgttctctggttcactca 385

                                                                       
Query: 186 tgtatgaagatgctcacttgggtaccctgtaacagttacaacaggagggtctacagataa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtatgaagatgctcacttgggtaccctgtaacagttacaacaggagggtctacagataa 445

                                                                       
Query: 246 tggtcacatctgccttgacatggtgaagacagatactattat---ctcttggataataaa 302
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 446 tggtcacatctgccttgacatggtgaagacagatactattattatctcttggataataaa 505

                                                                       
Query: 303 tatgagagaatatgaatttggcgcctagccataagtcctaggaaaaacattgttgaaaat 362
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatgagagaatatgaatttggcggctagccataagtcctaggaaaaacattgttgaaaat 565

                                                                       
Query: 363 tttctagaatatcg---cccatagtggcttcaataatctacagatacatggtcaaagggt 419
           |||||||||||| |   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttctagaatat-gtttc--atagtggcttcaataatctacagatacatggtcaaagggt 622

                                                                       
Query: 420 ttcttttagactgtgagttagatcagaaattttcttttttggaaaaggcttgcactttgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttcttttagactgtgagttagatcagaaattttcttttttggaaaaggcttgcactttgc 682

                                                                       
Query: 480 tctaagtagcttacagaaatattttgtcatttctatttgtgttttataatagagtttcct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctaagtagcttacagaaatattttgtcatttctatttgtgttttataatagagtttcct 742

                                                                       
Query: 540 tagattgggcctgaagagattaccaataggttaggaacagtttgaaataatctaaatatg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagattgggcctgaagagattaccaataggttaggaacagtttgaaataatctaaatatg 802

                                                                       
Query: 600 tatatttacatgtaatattataggcacaatagaattttaagtcacactaattaaatacaa 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tatatttacatgtaatattataggcacaatagaattttaagtcacactaattaaatacaa 862

                     
Query: 660 ttttaattaa 669
           ||||||||||
Sbjct: 863 ttttaattaa 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1073
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1063
Effective search space:   701580
Effective search space used:   701580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)