XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
GTTTTCCTTTAAATCTAGAGCAATGGTGAATAAAATAAAGGAGGAATTCA
GGGTCTGCAGGAGAAAGTCAACAACATAGATGAGAAGGGAAGCACAGAAG
ATGAACCAGAATGTGAACACTTCAGAAAGAAGATGAGATTTGAGGGAAAA
ATGACAGAGTTGGGTGTGAAGAAAATGTATTTGGAAATGAAAAATCTAAT
CAATCAAATCAAAAATGCAGAGTAAAGCATCATCATTAAAGTAGACAGCA
ACAGAAAGAATATTAAATATAGTAGACAGGATCAATTTTCTAGAACATTC
AAGTCCAAAATCATCAAGATAAAGAACAATAAAACCTGTCGGGCATGGTG
GTGCACGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAGTTTTCT
GAGTTCAAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGAC
TACACAGAGAAACCCTGTCTCAAAACAAAACAACACAAGACAAAAACGAA
CAAACAAAAGAACAATAAAACCTAGACTAAGCAAGCAAAATGACTCAGTG
GCTAAATGTTCTTGATACTCAGCCTGATGATAAGAGTTTGATCCCTGAAA
CTCATATGATAGAAGAAAATAAACAACTCCCTTCAGTTGTCCTGTGATTT
CCACTGGTGTGTGTGTGTGTG

CCCCCCCTNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCT
CTGAGCCCCATTTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTT
CTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCAATTTGGGAT
AGGTAAAGATCCTTTCCCAATCTGTTTGTGGTCTTTTTGTCTTATTGACA
GTGTCTTTTGCCTTGCTGAAGCTGTGCAATTTTATGAGGTCCCATTTGTC
AATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTT
CCCCTGTACCCATATCTTCCTGGTCTTTCTTTACTTTCTCCTCTATAAGT
TTCAGTGTCTCTTGTTTTATGTTGAGTCCCCCACCCCACATAAATAAGAC
CTTACTACGAGGAGATACGAATGCATCAATTCCCCTTCTTCTACATGTTA
TCTGCCCGTTGTGTCCATTTTACTTAATATTCCACTAGCGAACCAATCGG
CAGCTGTTCTGGTAAAAATAACACCTCTTCGTAAACATATTTTCATTACC
TTAAACCCTAAACATCACTCATTACCCCCCTCCACTTTATATGAGCCTAT
CCCGCTTTCCACAACATCCCCCCTGACAACGTCTCAATCGTCTTCCTTCN

Query= MSMg01no060_p09.b1 MSMg01no060_p09.b1 CHROMAT_FILE:
MSMg01no060_p09.b1 PHD_FILE: MSMg01no060_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:49 2005
         (685 letters)



>mm_chr9_93704518_93705602
          Length = 1085

 Score = 1004 bits (519), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 4/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaagttttc-c-tttaaatctagagcaatggtgaataaaataaaggaggaatt 62
           |||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcaaaag--ttcacatttaaatctagagcaatggtgaataaaataaaggaggaatt 494

                                                                       
Query: 63  cagggtctgcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaacca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagggtctgcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaacca 434

                                                                       
Query: 123 gaatgtgaacacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaatgtgaacacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtg 374

                                                                       
Query: 183 aagaaaatgtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagc 242
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagaaaacgtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagc 314

                                                                       
Query: 243 atcatcattaaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atcatcattaaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattt 254

                                                                       
Query: 303 tctagaacattcaagtccaaaatcatcaagataaagaacaataaaacctgtcgggcatgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 253 tctagaacattcaagtccaaaatcatcaagataaagaacaataaaacctgttgggcatgg 194

                                                                       
Query: 363 tggtgcacgcctttaatcccagcatttgggaggcagaggcaggcagttttctgagttcaa 422
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 193 tggtgcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaa 134

                                                                       
Query: 423 ggtcagcctggtctacagagtgagttccaggacagccaggactacacagagaaaccctgt 482
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 133 ggtcagcctggtctacagagtgagttccaggacagtcaggactacacagagaaaccctgt 74

                                                                       
Query: 483 ctcaaaacaaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagact 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  ctcaaaacaaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagact 14

                        
Query: 543 aagcaagcaaaat 555
           |||||||||||||
Sbjct: 13  aagcaagcaaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)