BAC Information

Click to search

BAC

Clone NameMSMg01-061D13
Chromosome9 (Build37)
Map Location 112,784,426 - 112,784,671
singlet/doubletsinglet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D13.T7 (MSMg01no061_d13.b1)MSMg01-061D13.TJ (MSMg01no061_d13.g1)
ACCAG287481AG287482
length1,506771
length of high quality
(start - end)
---247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no061_d13.b1 PHD_FILE: MSMg01no061_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005CHROMAT_FILE: MSMg01no061_d13.g1 PHD_FILE: MSMg01no061_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCCCCCCCTTCCCGNCCCGCGCCCCTNCTTACATATAAATTTTTTTA
CCGGTAGTGTGTGGCAACGCAAAANCACACAACATTAATAAATATAAATA
TTTGGAGGAGTGGTATAATGATATAATTCCATCTAATTATAAGAAGACAG
CCATCTTGCTGGGTATACNTTATATTTGATTATTTATCTCGCGCGCGTGC
CTCGCGTCTTATGTTTTTGTCGCGCTCCGCGTTAGTGTAAGACGCTGCGT
TTTGCTACCCATTATTTATTATTTGTTGTCGCATTTCCGCCGCACCGACG
AGAAACACAACACAATGCGGATAAATATAATGAGAAGGTAAAAAGAGANC
AGGGGNAAAAGGACATGTCGGCTCGCCTGCGTTCCGGTGCGGCGACTTTG
CCCCGTGCGCTTGTGCCGTTCACTCTGTTCCCCCGTGATTTTTTCGTACG
AGCGCGGTATTTGATACCGCAGCGTATATAATGTAAGATGCGCCGTATTT
TTGCGTAGCTATAATAAGTGCTGACCGCATATTTTAATCTAACACAGATT
ATAAATATAACACTATATATATTATCACTACAACGATGCGCACGTGTAAA
CCATTTNAACACGTTGTGGCGATATTATACGTTGCTATGATGATAAAAGA
GATGACAACCGTTGCGTTGTGTGGGCGAGCGGACCGGGCGCACGGTAAAT
ATGTGATAAAGCGATGTCGACGTGGATATGATACGCTCGCGACACATATA
TGCGATGCCGACGAGTAAGATGAGATGTTAGTGAGCGTGTGTACCGATGG
AGATTATGATAGATTAGTATAATTTTACATCACGTGTGCTGCGTGTTGAG
AAACATACCGAGTTTAAGTATTATCACACGAGACGTCGCGCGAGGGCTGT
ATGTAGCGCTCTTTTTATTAACACGAATTATACAATAATACGCCAGTGAC
GCGCACAAGTCAGATGCTTAGCATTAAGTATGTACACAGCGATCCATAAC
GCGGCGGTAGTGTTATACCGGCCGNCGCTCTGTGTCCGCGTGAGATTGTG
GGTGTGTACGAGACGCAACACACGCAGCTAATCTTATATGTGTAATATAA
CGATACAATCGATAACATACCGCAACCACCACGTACAAGATAGAAACGGG
AGTGTTATATACGCCGTGNTGTCGTGTATTACATAGATACGATATGGAGT
AGCGACAGTCGATCCAGACTACTGATGTGCCTCGTTGTTATGTGACGGTT
GTTGAGGTATAGATACTATGACGCATCATGATGTGTGAGAGGACGAAATA
TAGCGTCGCCGTCNTGTGTGATATACTATGCGCGCATATATCACACATAT
GTAANGATATACGCGCATGGCGCGCGCGCGCTGACGCGGCGCGGCGCTGA
CTATGTAGGTGACATATTGCTGTGNGGCAGCACGACGTATAGATAATACT
GGCACGATCCGTGCGGACTGCGTGAGATGTGTGTGCATATGATCACAACG
CGACGN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGACCAGCCAGAGATACATAATGAGACCC
TGTCTCAAAACAAAAGAAGCCAAATATTTTGAAAAGAAACCACTTTAATA
CTTAAAGTTCCAATATCTGTGACATCATTTTCCCCAATCCCAGAATCCCA
GCTCACCATTTATCATGCACAAACATAGACAACACAACCTTGTGACCAAA
TACCTGGACTGTAGAGAAATAGTTGATTCTTAATTTTGTAGCTATCAATG
TGTCTATCTGCTCATTACTCACTGGGGAATCAGTTTTATATGTAACACAG
TGTGTGACCGGGACAGTGCTCTGAACAGTGGCAGAATCCATAGGAACACA
GCTGTGAGCTTTTCCGCCATCAGGATAGGTGCACAGTAGTGTTGACCTAT
CACTCTCAGTCACTTACAGACAATGTCGTGCCATAACTTGAACATTTTCT
AAATGAAAAACATGCAAAATTCATTCTAACACCCTGTGTCCTATCTTCCA
TCCTCTGATTCTGCCTCACTGGAATTTGTTCAGGCCATATTCATCTTCTC
TATGTATAGAAACTGTTCAAATATATATTGCCCTCCTATAGATCATGATT
CTCTTTGAACACTTCCCACATGCATTTTTTTCCTTCTCTTGATGTCTTGC
ACATTGTTTGTCTATTGTATTATCATTGTTGTGTTGCATATTTAATGCTT
TTACCCCTTATATTTACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d13.g1 MSMg01no061_d13.g1 CHROMAT_FILE:
MSMg01no061_d13.g1 PHD_FILE: MSMg01no061_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:08 2005
         (247 letters)



>mm_chr9_112784226_112784871
          Length = 646

 Score =  400 bits (207), Expect = e-116
 Identities = 237/247 (95%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccagccagagatacataatgagaccctgtctcaaaacaaaagaagccaaatattttga 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccagccagagctacataatgagaccctgtctcaaaacaaaagaagccaaatattttga 260

                                                                       
Query: 61  aaagaaaccactttaatacttaaagttccaatatctgtgacatcattttccccaatccca 120
           |||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 261 aaagcaactactttaatacttaaagttgcaatatctgtgacatcattt-ccccaatccca 319

                                                                       
Query: 121 gaatcccagctcaccatttatcatgcacaaacatagacaacacaaccttgtgaccaaata 180
           ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gaatcccagctcaccgtttaacatgcacaaacacagacaacacaaccttgtgaccaaata 379

                                                                       
Query: 181 cctggactgtagagaaatagttgattcttaattttgtagctatcaatgtgtctatctgct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 380 cctggactgtagagaaatagttgattcctaattttgtagctatcaatgtgtctttctgct 439

                  
Query: 241 cattact 247
           |||||||
Sbjct: 440 cattact 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)