BAC Information

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BAC

Clone NameMSMg01-061H19
Chromosome9 (Build37)
Map Location 99,419,126 - 99,419,684
singlet/doubletsinglet
Overlap geneArmc8
Upstream gene4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534
Downstream geneDbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H19.T7 (MSMg01no061_h19.b1)MSMg01-061H19.TJ (MSMg01no061_h19.g1)
ACCAG287685AG287686
length711736
length of high quality
(start - end)
560 (76 - 635)228 (80 - 307)
definitionCHROMAT_FILE: MSMg01no061_h19.b1 PHD_FILE: MSMg01no061_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:28 2005CHROMAT_FILE: MSMg01no061_h19.g1 PHD_FILE: MSMg01no061_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGGATCCGCGG
AATTCTATGATCTGCCAATTACTCAGCAATTTCCTAGAATTAAGAACTTC
CTAAAAATACTACATAATCCCATCACAGAAGAATAGCACAGTAACTTTTC
TTTATCACACACATAAAAACTATAGTTTTTAAACAATTATAACTTATTCT
TTATTTGTTATCTTTCTACAGAAATGATCAACAGCCTTACCAGACATTTG
TACACATTGTAAATACAGGTTTTAGTAGACTATTGATTAGACTGTTATGT
TGCAAGTACTTCTAGAACACGGTATCATGTATTAAGTCATTAATTCCAAA
ACAATCATTTATTGACAAAAAAAAAATACAAAGAAGTACAAACGAGCATC
CTACTCCCATGATGCACAGTCCATCTCTCTAACTCCTGTTAGGCTACGGC
ATGGTCTTTGGGAGCTGTAAGGATATAGAAGATACTCCTCCTGTTTCCTA
ATAACTCAATCATAAATTACACACTCCATGTCATCATCGATTTTGTCTAC
ATCGATTTTGTCTACATGAGTTACCATCAAAACGTTGTCTCTTGTGATAC
ACCACATGTCTAAAGTGAACAAAATATTTCAGTGCCAATATCCATAAACC
ATGGTTAGACACAGGTAATTCCACATCTCTAATGTTTGCTTTGAAGTAAC
AGTTCACAAGN
ATGAAGTGGGAGGCCCGGNGGCCGCCTGGTTGCCGCACTCGAGNGAACNA
NAGAAGTTAACGNGAGGAGGGCCANACNGCAGCACNCAGGGGCAGAGGGC
ACTGGACACTCTGGGCCCCCNAGAGCAGACTCCCAACCCCTCACAGGCTC
CACGAAGGNACTCTGCAGCCTTCTTAAAATACTTTTTTTTTTAATTATTT
ATTTATGATATGTAAGTACACCATAGCTGTCTTCAGACACACTTTATTAG
GGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGATTGCTGAG
ATTTGAACTTTTTTCATTTGAAGAGCAGNCAGAAGNACTGCTTCNCATTC
TCTCGTAGTACCCCCCCTTTCACCATCGCGCAGGTGGTTGTGTGAGGAAG
ACAAGGGTGCCTCGACAGTGGAAGAGATCAGTTTGGGGAACGCCACTGTC
ACAGCCCAAAAGGTTCAAACAGACAGTAGACATCACAGTCTAGTTTTTCA
TTCCTTAGCCATAAGGCGTAAATGTAGTGTCGACACATAAACCACAGCTT
TTATTATAAAGGGAATAAGAGATAGTTTATTCTGGAGCCATTTGAGTGTC
CATGTTCAAGGGACACAGATACAGGATATCCAAATGGTTTTTTTCTTTTG
TGTAAGCAGTTTCAAAAGGTTTTTATAGTTTTACTAATCAATCAAAGTCC
TAACTTTAACTACAATACTTGCGCTGATTTGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h19.b1 MSMg01no061_h19.b1 CHROMAT_FILE:
MSMg01no061_h19.b1 PHD_FILE: MSMg01no061_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:28 2005
         (560 letters)



>mm_chr9_99418926_99419885
          Length = 960

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatttcctagaattaagaacttcctaaaaatactacataatcccatcacagaagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatttcctagaattaagaacttcctaaaaatactacataatcccatcacagaagaata 260

                                                                       
Query: 61  gcacagtaacttttctttatcacacacataaaaactatagtttttaaacaattataactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagtaacttttctttatcacacacataaaaactatagtttttaaacaattataactt 320

                                                                       
Query: 121 attctttatttgttatctttctacagaaatgatcaacagccttaccagacatttgtacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctttatttgttatctttctacagaaatgatcaacagccttaccagacatttgtacac 380

                                                                       
Query: 181 attgtaaatacaggttttagtagactattgattagactgttatgttgcaagtacttctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtaaatacaggttttagtagactattgattagactgttatgttgcaagtacttctag 440

                                                                       
Query: 241 aacacggtatcatgtattaagtcattaattccaaaacaatcatttattgacaaaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacacggtatcatgtattaagtcattaattccaaaacaatcatttattgacaaaaaaaaa 500

                                                                       
Query: 301 atacaaagaagtacaaacgagcatcctactcccatgatgcacagtccatctctctaactc 360
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 501 atacaaagaagtacaaacgagcatcctactcccatgatggagagtccatctctctaactc 560

                                                                       
Query: 361 ctgttaggctacggcatggtctttgggagctgtaaggatatagaagatactcctcctgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttaggctacggcatggtctttgggagctgtaaggatatagaagatactcctcctgtt 620

                                                                       
Query: 421 tcctaataactcaatcataaattacacactccatgtcatcatcgattttgtctacatcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctaataactcaatcataaattacacactccatgtcatcatcgattttgtctacatcga 680

                                                                       
Query: 481 ttttgtctacatgagttaccatcaaaacgttgtctcttgtgatacaccacatgtctaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtctacatgagttaccatcaaaacgttgtctcttgtgatacaccacatgtctaaag 740

                              
Query: 541 tgaacaaaatatttcagtg 559
           |||||||||||||||||||
Sbjct: 741 tgaacaaaatatttcagtg 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)