Query= MSMg01no062_f05.b1 MSMg01no062_f05.b1 CHROMAT_FILE:
MSMg01no062_f05.b1 PHD_FILE: MSMg01no062_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:48 2005
(619 letters)
>mm_chr9_116700692_116701710
Length = 1019
Score = 1112 bits (575), Expect = 0.0
Identities = 608/619 (98%)
Strand = Plus / Minus
Query: 1 taaaaatgtaaatcttttcctttacaatgagtcagccaggataaagctgagtttaagata 60
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 819 taaaaatgtaaatcttttcctttacaatgagtcagccaagataaaactgagtttaagata 760
Query: 61 cttttttaaaaatcgtattttgataaactagttatattctagaatgctatttaaggggaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cttttttaaaaatcatattttgataaactagttatattctagaatgctatttaaggggaa 700
Query: 121 aattaagggtgtaaactaatttcagtatgtcacagtactgttttgtataaacaagtgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aattaagggtgtaaactaatttcagtatgtcacagtactgttttgtataaacaagtgtgc 640
Query: 181 atgtaacagtcttatttttatcaaatgtaaatgctgtagcgactttgaaaacatttacat 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 639 atgtaacagtcttatttttatcaaatgtaaacactgtagcgactttgaaaacatttacat 580
Query: 241 taccatttttattagtaaatagcacattgtttgacagaacgtacgagtgtctcatgaagg 300
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 579 taccatttttattagtaaatagcacagtgcttgacagaacgtacgagtgtctcatgaagg 520
Query: 301 gtgtagagacagcatggaggacttgtggagaaggaactgagatacgtttttaatgaccag 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 519 gtgtagagacagcatggaggacttgtggagagggaactgagatacgtttttaatgaccag 460
Query: 361 tgggcctgccagatgtgggattgggtctgagagtattgtcagagccagaaagttaaccat 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgggcctgccagatgtggggttgggtctgagagtattgtcagagccagaaagttaaccat 400
Query: 421 gtcatgtgacagtgacacgggcctgggcataacataaacagtttggtcagttctaacttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtcatgtgacagtgacacgggcctgggcataacataaacagtttggtcagttctaacttc 340
Query: 481 ggaaccttctagctgaacacccccattgaacggaattccccatgtgggacgcactaagaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 339 ggaaccttctagctgaacacccccattgaacggaattccccatgtgggacacactaagga 280
Query: 541 agagttttctagttactaaatgataggtaacactatagcaacaaggatttaaaccacatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agagttttctagttactaaatgataggtaacactatagcaacaaggatttaaaccacatt 220
Query: 601 gtgtgtactggcaggtttt 619
|||||||||||||||||||
Sbjct: 219 gtgtgtactggcaggtttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_f05.g1 MSMg01no062_f05.g1 CHROMAT_FILE:
MSMg01no062_f05.g1 PHD_FILE: MSMg01no062_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:48 2005
(479 letters)
>mm_chr9_116534666_116535544
Length = 879
Score = 857 bits (443), Expect = 0.0
Identities = 469/479 (97%), Gaps = 4/479 (0%)
Strand = Plus / Plus
Query: 2 ccatccacatattttattgaggtaggctatcacattagtctggggctcatctttttggct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccatccacatattttattgaggtaggctatcacattagtctggggctcatctttttggct 261
Query: 62 agacagactggtctctgtctccccaatcatgacattactgtgcatctggcttttataatg 121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agacaggctggtctctgtctccccaatcatgacattactgtgcatctggcttttataatg 321
Query: 122 tgcgtgctgcacattaatgtgaactcaaggccttctgtaagtactctaaggactgagaca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgcgtgctgcacattaatgtgaactcaaggccttctgtaagtactctaaggactgagaca 381
Query: 182 actcatacgccccatatcttggaatttaattttcctatatggttttatttcctattccac 241
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 actcataagccccatatcttggaatttaattatcctatatggttttatttcctattccac 441
Query: 242 aaaaacacacttatatgcttaagtttcttttaaggtatcatatttaacaagtaatttatc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 aaaaacacacttatatgcttaagtttcttttaaggtatcatatttaacaagttatttatc 501
Query: 302 tgtttgacagttttagtggaatcatatgggaactcccaaggcaaggcattggatt--ctg 359
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||
Sbjct: 502 tgtttgacagttttagtggaatcatatgggaaatcccaaagcaaggcatt--attttctg 559
Query: 360 ccaatattgattagtattgattagtatagaggggaacccgtaagcataaacacttccaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaatattgattagtattgattagtatagaggggaacccgtaagcataaacacttccaac 619
Query: 420 caccagcttgcaattttcattgtgatgtgatgtgatgtgatgtgatgtgatgtgatgtg 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caccagcttgcaattttcattgtgatgtgatgtgatgtgatgtgatgtgatgtgatgtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
