Query= MSMg01no062_l22.b1 MSMg01no062_l22.b1 CHROMAT_FILE:
MSMg01no062_l22.b1 PHD_FILE: MSMg01no062_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:39 2005
(217 letters)
>mm_chr9_72711537_72712153
Length = 617
Score = 381 bits (197), Expect = e-110
Identities = 211/217 (97%), Gaps = 4/217 (1%)
Strand = Plus / Minus
Query: 1 tctccttggagcatccttcccaagccccct--ctctgtgaaagccgccattcaccaggca 58
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||||
Sbjct: 385 tctccttggagcatccttcccaag--ccgtggctctgtgaaagccggcattcaccaggca 328
Query: 59 aggcacaaacagggctcccttaacctactgccctctggacacatcactctctgttaaaca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggcacaaacagggctcccttaacctactgccctctggacacatcactctctgttaaaca 268
Query: 119 ggcagccactgccagatgctctggctaaaaatggtcccagatggtcagctgtccccttca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggcagccactgccagatgctctggctaaaaatggtcccagatggtcagctgtccccttca 208
Query: 179 tagaacacccttcccttcccttcccttcccttccctt 215
|||||||||||||||||||||||||||||||||||||
Sbjct: 207 tagaacacccttcccttcccttcccttcccttccctt 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space: 126464
Effective search space used: 126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no062_l22.g1 MSMg01no062_l22.g1 CHROMAT_FILE:
MSMg01no062_l22.g1 PHD_FILE: MSMg01no062_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:39 2005
(726 letters)
>mm_chr9_72631082_72632207
Length = 1126
Score = 1309 bits (677), Expect = 0.0
Identities = 714/731 (97%), Gaps = 12/731 (1%)
Strand = Plus / Plus
Query: 1 ctggagagatggctcagcagttaagagcactgactactcttccagaggtcctcagttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 203 ctggagagatggctcagcagttaagagcactgactactcttccagagatcctcagttcaa 262
Query: 61 ttcccagcaaccacatggtggctcacaaccatctgtaatgggaccccatgcctttgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcccagcaaccacatggtggctcacaaccatctgtaatgggaccccatgcctttgtctg 322
Query: 121 gtgtgtctgaagacagacagctacagtggaagaagaaagaaaaaaaagaaaaagagaaac 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 323 gtgtgtctgaagacagacagctacagtggaagaagaaagaaaaaa--gaaaaagaaaaac 380
Query: 181 aaaacaaaacaccccaaacatacaaaataagaaaagaaaaatagattgatatttgggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacaaaacaccccaaacatacaaaataagaaaagaaaaatagattgatatttgggaag 440
Query: 241 agggtctccaacctgcttgtcacacttttag----ctctgactctctttaagtcaccatg 296
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 441 agggtctccaacctgcttgtcacac----agggagctctgactctctttaagtcaccatg 496
Query: 297 ctcctgtatatcataccagtaaactccctggtacactactagaacagaaaataataatga 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 ctcctgtatatcataccagtaaactccctggtacactactagaacagaaaataatagtga 556
Query: 357 aactgtagctcccaagaactcagatgtgactctatttggaaatgggatagttgtaggttc 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aactgtagcccccaagaactcagatgtgactctatttggaaatgggatagttgtaggttc 616
Query: 417 acgtggatgatgttatgctagattatcacgggtccctattgtctaacgaaaaggccaaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acgtggatgatgttatgctagattatcacgggtccctattgtctaacgaaaaggccaaat 676
Query: 477 gaagacct-gggaaactgtcctgtacagagaaaggcaggggccggaaatggcattgccat 535
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaagacccagggaaactgtcctgtacagagaaaggcaggggccggaaatggcattgccat 736
Query: 536 acatcagaagttcagagattgtcatgggcagatcaggaacagacctgatgtgcccacctg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acatcagaagttcagagattgtcatgggcagatcaggaacagacctgatgtgcccacctg 796
Query: 596 agatgccagagaatgccactcaatgaaagtcaggttaagagtgtcttagctgccagtggt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agatgccagagaatgccactcaatgaaagtcaggttaagagtgtcttagctgccagtggt 856
Query: 656 ccagagcagtcttattcgagaaagaactttttttttttaaagatttatttattatttagt 715
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 857 ccagagcagtcttattcgagaaagaactttttttttttaa-gatttatttattatttagt 915
Query: 716 atatgtaagta 726
|||||||||||
Sbjct: 916 atatgtaagta 926
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1126
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1116
Effective search space: 799056
Effective search space used: 799056
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
