BAC Information

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BAC

Clone NameMSMg01-063B14
Chromosome9 (Build37)
Map Location 102,049,998 - 102,050,110
singlet/doubletsinglet
Overlap geneEphb1
Upstream gene3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B14.T7 (MSMg01no063_b14.b1)MSMg01-063B14.TJ (MSMg01no063_b14.g1)
ACCAG288918AG288919
length1,200789
length of high quality
(start - end)
---113 (139 - 251)
definitionCHROMAT_FILE: MSMg01no063_b14.b1 PHD_FILE: MSMg01no063_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:19 2005CHROMAT_FILE: MSMg01no063_b14.g1 PHD_FILE: MSMg01no063_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAATAAATATAAAAATTATAATATTATTAATTTCTTTTTAATTNN
TTCTTTTANAAAACTATTCTTTTTTTTCTCTTCTAATAAATTTGCGTGCC
GCCTAATTACGTATCTCATCTTATTATGCGCGCACGTAGAGTCAATCCCC
GCCCGGCGTTAAACTCTCCCAATTTTCCCCCCCTTCATACAGGCATAAAC
TATACTCCCCCAACACTCAGGGTTGTGAATGTCCAACCATCCTATCCTTT
CTCCCATATTCGCTCCTAAACAAAGAATACCTACATACTCAAATACCTTC
TCGCTTCACATTCATTTCACTATCTCTACTCCTTTGCTCCTCAAACACTA
TATCAGATTACTACTCTCGCTCACTTTTATAACCACCCCCCGATACCCAG
ACTCTACTCCCCATTCTTATATTACCAACCGTATAATAACCATATATATA
ATCTTATATCCATCCTCTCGCCTCTTGGTTCATCATCAGCGCGTCCGCCG
CCGCATCACCCGGCACACATACATCCATTCCGCCGTTTCAGTCTCCTTGC
GCTTCCTCCCCCTTGTGTGGGCGATTATTATAATTGTCTCCCACCAAAAT
ATATACCACCTTCCCTCTTTACCATCCNNTNTATATAAGTCCCCCGTGGC
GCAATATACTCTCCCCTCTCTTCTCATACATCCGTACACCTTCTCCATCA
CTGTGTCATCTCCTAAATATATTCTTTCTTATGCTCATTCTCATAAACCT
ATGTCTACATTTATCGCTCTGCGATTCCGCCTCATCATCTACTACATACC
CATCTACTTGTTATCGTATTACGTGGTGCATTTACCATTAATAACCAACC
ACGCCCACGCTAACATTCTTTATATACATATTTTATATATACAACANTTC
GTATATAACTATAAATGTCNTAACTCTTACCTACTACACATAGTGTATGC
TCATGAAATTATAAATCACCGCCACTATCAATATTACCCACACGATATCA
AGGCGCCCGCTTCTTATTGTTTGTTCTTACCGTGTTGGAGGAAGCGCGAC
GCACACCGTGCTCGCCGCTGCCCACCGCCCGCGTAACACANTGTGTCAAT
GAGATTATGCATGATATGTCTTTCACCTCTTCATCTCAATTACACTCACA
TTACCTATCGTCTACGCTCGCACTAACGTCCCCGCTCGCTATCTGCGACC

NNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNCCCNNNNNNTTTT
TTTNNCCCCCTATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCAGAGATCA
GTCTGGATATGAACTCTCCCCCTGGCGCTTTGATCATTTCTTCCAGCTTT
CTGTCATATCCCGATTTGATATACATCCCATTATGTATTTCACCTCCATT
TTATGGATTAACAAGTTGATTGGGTCACGACTAAGGCCAGCGCCAGGTGA
TGTCATCCCATTTCTCAAGACGATAGGATAGTTATCTAACAGAATTATTA
CTTACTCGTATGCCTGCCTATTTTGTTAGCCTTCGTATCCATGATCAAAC
TCATCAAGCATTGAAATTTTTTTTGTTGACACCCGCCCTGCTGGTATGAT
GTGTTTTGAGCTTTGACACCCATCTTCCCCCCTAAAAAATACATTCCGTA
TCGTCACCTCGAACATTAATTATTCCCCCCTAGCGTCCACCATTAACCCA
TCCCTATCAATATCGCCACTTTGTTCAACCGGATCCCCAACATGTTATAC
CACCCTACATCGCCTTCCACACCAGCGACCCTTATTCCGAAAATTTTATT
CCATACATGTTACCCTTGTTTACCCCCTGTTCCCCTTGTCCTTTTGCACC
ACCCTAATTTTCTTAGCCTTTATTAACCAATTCCTTTCCAAACTCCGTAT
TACACTATTTTCCCCCCCGTCCACCCCTACCCCAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b14.g1 MSMg01no063_b14.g1 CHROMAT_FILE:
MSMg01no063_b14.g1 PHD_FILE: MSMg01no063_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:19 2005
         (113 letters)



>mm_chr9_102049798_102050310
          Length = 513

 Score =  211 bits (109), Expect = 1e-59
 Identities = 112/113 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccagagatcagtctggatatgaactctccccctggcgctttgatcatttcttccagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccccagagatcagtctggatatgaactctccccctggcgctttgatcatttcttccagct 254

                                                                
Query: 61  ttctgtcatatcccgatttgatatacatcccattatgtatttcacctccattt 113
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttctgtcatatctcgatttgatatacatcccattatgtatttcacctccattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)