BAC Information

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BAC

Clone NameMSMg01-063C03
Chromosome9 (Build37)
Map Location 38,889,382 - 38,889,967
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938
Downstream geneOlfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C03.T7 (MSMg01no063_c03.b1)MSMg01-063C03.TJ (MSMg01no063_c03.g1)
ACCAG288944AG288945
length690678
length of high quality
(start - end)		558 (55 - 612)462 (56 - 517)
definitionCHROMAT_FILE: MSMg01no063_c03.b1 PHD_FILE: MSMg01no063_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005CHROMAT_FILE: MSMg01no063_c03.g1 PHD_FILE: MSMg01no063_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCCTAAAA
TCCAAAACTGGAAGCCATAATACACACACGCGCACACACACACACATGCA
CACACACACACACACACACATATATATATCCAGAAGAGCAGGTACATTTT
ATGTTTATTTTATGCTTCTTATTTTACATTTAACAAATGCTTAACTACAC
ATATATTGTTAGAACCCATGAATTACGTTTTCTTTCTCATTAAATTACAT
TTGTATCAGTTAACACCATGCCTTGAATATATGAATTAAAAATTACTAAA
CAACTTAAAGTAAAAAGAAGCTTCAAAATGACTGTCAGATAATCACACTG
CCTGAGTTTAAATTTGTGTACACACAAGAGTTTATTGTGATTCTATATTT
TAACGATTAGGATACTGCTTATGGCTACTGTGGCAATCAAAATGTCTGTA
TATATCTTGACTGATTTCAGTTGACATGAAAGAAGGTAATGGGGGAATCT
CACAAGACCATGCCCATCAATAAAAAGCTACAATTTTATGTTCTATTGCT
GTGACAAAACATCATGTTCATGTCAACTTACAAAACAAGGCTTTAGCTTG
TGGTTTGATTAAAGTTCCAGAGGTTCAGTCCCCTATTCCTGATACTAGGG
AGGCATGCAGTGAGCATGTTACTGGCGCAATACATAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAAAAGTCTTCAATTTTGCTGTTTATTTCTTCCCTTTTTATGAA
TGTGAGTACCCTTGCATTTGTGTCACAGACATTCAGAATTAAGAGTTCAC
CTTTGTGGATTTTTCCTTTGGTGAGTATGGATTCTCTATCCACATCTCTT
TTGTTATCTTCTGGTTGAAAATCTAATTTATTGGATAGTATAATGGCTAC
TGAAGTTTGTTTTTTGGAACCATTTGCTTAGAATTTTTCCAGCCTTCTCT
GAGGTAGTGTCTATCTTTGTCATTGAGTTATGTTTCCTGTATGCAGGAAA
ATTCTTGATCTTGTCTGTGTATCCAGTTTTTTTTTAGCTTTTGTCTTCTT
ATTGGAGAATTGAGACCATTGATGTTGAGAGATATTAAAAGCCAATGATT
GCTATTTTCTGGTAATATTGTTGATGGATATGGTATTACATATGTGTGGT
TCTCTTCTTTTTGGTGTTGCGAGATGATTACTTTCTTCTGTTTTCTTGCG
TGAAGTTACCCTTCTTGTGTTGAAGTTTTCCTTCTAGTATCCTTTGTAGG
GTTGAATTACCTGAAAGGTGCTGTTAACATTTGGCTCTCGTATGTAAAAT
TTTGGAATCTACATCAATGGACATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c03.b1 MSMg01no063_c03.b1 CHROMAT_FILE:
MSMg01no063_c03.b1 PHD_FILE: MSMg01no063_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:22 2005
         (558 letters)



>mm_chr9_38889211_38890168
          Length = 958

 Score =  971 bits (502), Expect = 0.0
 Identities = 552/586 (94%), Gaps = 29/586 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactggaagccataatacacacacgcgcacacacacacacatgcacacacacacacaca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 172 aaactggaagccataatacacacacgcgcatacacacacacatgcacacacacacacaca 231

                                                                       
Query: 61  cacac--------------------atatatatatccagaagagcaggtacattttatgt 100
           |||||                    |||||||||||||||||||||||||||||||||||
Sbjct: 232 cacacacacacacacacatatatatatatatatatccagaagagcaggtacattttatgt 291

                                                                       
Query: 101 ttattttatgcttcttattttacatttaacaaatgcttaactacacatatattgttagaa 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttattttatgcttcttattttacatttaacaaatgcttaactacacatatattgttagaa 351

                                                                       
Query: 161 cccatgaattacgttttctttctcattaaattacatttgtatcagttaacaccatgcctt 220
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 352 cccatgaattacgttttctttctcattaaattacatttgtagcagttaacaccatgcctt 411

                                                                       
Query: 221 gaatatatgaattaaaaattactaaacaacttaaagtaaaaagaagcttcaaaatgactg 280
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 gaatatatgaattaaaaattactaaacaacttaaagtaacaagaagcttcaaaatgactg 471

                                                                       
Query: 281 tca-----g----ataatcacactgcctgagtttaaatttgtgtacacacaagagtttat 331
           |||     |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcatgactgtcaaataatcacactgcctgagtttaaatttgtgtacacacaagagtttat 531

                                                                       
Query: 332 tgtgattctatattttaacgattaggatactgcttatggctactgtggcaatcaaaatgt 391
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgtgattttatattttaacgattaggatactgcttatggctactgtggcaatcaaaatgt 591

                                                                       
Query: 392 ctgtatatatcttgactgatttcagttgacatgaaagaaggtaatgggggaatctcacaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctgtatatatcttgactgatttcagttgacatgaaagaaggtaatgggggaatctcacaa 651

                                                                       
Query: 452 gaccatgcccatcaataaaaagctacaattttatgttctattgctgtgacaaaacatcat 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 652 gaccatgcccatcaataaaaagctacaattttatgttctattgctgtgacaaatcatcat 711

                                                         
Query: 512 gttcatgtcaacttacaaaacaaggctttagcttgtggtttgatta 557
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gttcatgtcaacttacaaaacaaggctttagcttgtggtttgatta 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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