BAC Information

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BAC

Clone NameMSMg01-063C18
Chromosome9 (Build37)
Map Location 103,844,852 - 103,845,293
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978
Downstream geneNphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C18.T7 (MSMg01no063_c18.b1)MSMg01-063C18.TJ (MSMg01no063_c18.g1)
ACCAG288974AG288975
length701697
length of high quality
(start - end)
625 (43 - 667)449 (73 - 521)
definitionCHROMAT_FILE: MSMg01no063_c18.b1 PHD_FILE: MSMg01no063_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:26 2005CHROMAT_FILE: MSMg01no063_c18.g1 PHD_FILE: MSMg01no063_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGATGCAACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAA
CACTCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACTACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACTGGAGGATCTCTCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATATGGTACATTTACACAATGGAGTA
CTTACTACTCAGCTATTANAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGAAACCCAATCACAAAA
GAACTCACACAATATGTACTCACTGATAAGTAGATATTTAGCCCAGAAAC
TTAGAATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAA
G
GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAATGCTGAAGCGAATTGTCTGGGTT
GAGAATCCCCACCAGAGATGCACCGCTGGGCATGTCCGAGAGAGTGCGTC
CCTAAAGATTTACCTAAGGACAGAAGACCCACTCTGAATGTAGGAGATAT
GAATATACCCTATGTTATATTTATTAAGAGGGCGGGGCAGACATATGTAG
TCTAGCTGCCTGAGAAACAGCTGTGTGTATGGGAATGGCTTGCCCGAAAC
AGTGACAACCTCTTTAGAAAAGTAGATAAGGACTAGGGTTTAAATACGGA
CACACACATGAAAGGGGAAAGGCAGGAAAAAACATGGGTGCTTGATCACT
GGGGAGCTATTACATGAAATGGCTGGTTGTATTGATAAGGCTAATGTATG
CTTCCTACACACATACAGATTCTTGAAATCTCTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGTCCCCCCTCCCTTTCACTCCCTTTTGTTTT
CCCCTCCCCCTTCTTTTCTCCCTTTTCTTTTCTTCCCACTTTCTGCTACC
CCCCTATTTCCTTTCCTCCTCGCACTTTTTTTCTCTTTTATTCCTCCTCT
CCCTGCTTTCCCTTCTCCCATTTTCCGCCTCCCCCCTTCTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c18.g1 MSMg01no063_c18.g1 CHROMAT_FILE:
MSMg01no063_c18.g1 PHD_FILE: MSMg01no063_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:26 2005
         (449 letters)



>mm_chr9_103844649_103845497
          Length = 849

 Score =  824 bits (426), Expect = 0.0
 Identities = 439/444 (98%), Gaps = 2/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttaatgctgaagcgaattgtctgggttgagaatccccaccagagatgcaccgctgggcat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ttaatgctgaagcgaattgtctgggttgagaatccccaccagagatgcacctctgggcat 263

                                                                       
Query: 62  gtccgagagagtgcgtccctaaagatttacctaaggacagaagacccactctgaatgtag 121
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 264 gtccgagagagtgcgtccctaaagat--acctaaggacagaagacccactctgaatgtag 321

                                                                       
Query: 122 gagatatgaatataccctatgttatatttattaagagggcggggcagacatatgtagtct 181
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagatataaatataccctatgttatatttattaagagggcggggcagacatatgtagtct 381

                                                                       
Query: 182 agctgcctgagaaacagctgtgtgtatgggaatggcttgcccgaaacagtgacaacctct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agctgcctgagaaacagctgtgtgtatgggaatggcttgcccgaaacagtgacaacctct 441

                                                                       
Query: 242 ttagaaaagtagataaggactagggtttaaatacggacacacacatgaaaggggaaaggc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttagaaaagtagataaggactagggtttaaatacggacacacacatgaaaggggaaaggc 501

                                                                       
Query: 302 aggaaaaaacatgggtgcttgatcactggggagctattacatgaaatggctggttgtatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggaaaaaacatgggtgcttgatcactggggagctattacatgaaatggctggttgtatt 561

                                                                       
Query: 362 gataaggctaatgtatgcttcctacacacatacagattcttgaaatctctgtgtgtgtgt 421
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 562 gataaggctaatgtatgcttcctacacacatacagattcttgaaatctgtgtgtgtgtgt 621

                                   
Query: 422 gtgtgtgtgtgtgtgtgtgtgtgt 445
           ||||||||||||||||||||||||
Sbjct: 622 gtgtgtgtgtgtgtgtgtgtgtgt 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)