Query= MSMg01no063_l16.b1 MSMg01no063_l16.b1 CHROMAT_FILE:
MSMg01no063_l16.b1 PHD_FILE: MSMg01no063_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:12 2005
(314 letters)
>mm_chr9_29921513_29922226
Length = 714
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%), Gaps = 3/309 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcctttctgttcctaccctacccaatgtttctagcattttcttgctgatcac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcctttctgttcctaccctacccaatgtttctagcattttcttgctgatcac 263
Query: 64 tggcttcttttcccagaagtcagtataaagacattacagcctcataatccaagtgtgtta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcttcttttcccagaagtcagtataaagacattacagcctcataatccaagtgtgtta 323
Query: 124 gaattagatcaatcaaggtcttttgaaagttcacagtttgaaatcttcaacagagctgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattagatcaatcaaggtcttttgaaagttcacagtttgaaatcttcaacagagctgaa 383
Query: 184 taaaattcttattagagttgggagctgggggagccatcttggttcccaga-tccctcaga 242
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 384 taaaattcttattagagttgggagctgggg-agccatcttggttccc-gaatccctcaga 441
Query: 243 gactagtctgtgcaggtgagagtgctgactacagaagctacacagcttctgggtcagaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gactagtctgtgcaggtgagagtgctgactacagaagctacacagcttctgggtcagaac 501
Query: 303 ccatttcgg 311
|||||||||
Sbjct: 502 ccatttcgg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_l16.g1 MSMg01no063_l16.g1 CHROMAT_FILE:
MSMg01no063_l16.g1 PHD_FILE: MSMg01no063_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:12 2005
(284 letters)
>mm_chr9_30009811_30010494
Length = 684
Score = 503 bits (260), Expect = e-147
Identities = 275/280 (98%)
Strand = Plus / Minus
Query: 1 tctggcatttctaatggaatccacagatccgaggatgaggacagcgctgggtagccttgg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480 tctggcatttctaatggaatccacagatccgaggatgaggacagtgctgggtagccttgg 421
Query: 61 aaattcagccaggtcttgggaagagcgtccaagaacttgaaagactgccagcttcccttg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 420 aaattcagccaggtcttgggaagagtgtccaagaacttgaaagactgccagcttcccttg 361
Query: 121 cccctgcatcctattgctgcaacctggcacctttctcttactggcaaacacaatgaatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 cccctgcatcctattgctgcaacctggcacctttctcttactggcaaacacaatgactgt 301
Query: 181 aaacagctcttacagttcaatgcttaagtgaaatgacaggctcaagtgattctctggtat 240
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 300 aaacagctcttacagttcaatgcttacgtgaaaagacaggctcaagtgattctctggtat 241
Query: 241 tgaacttcagacctgaggaaaaagggatgttgttttagct 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaacttcagacctgaggaaaaagggatgttgttttagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
