CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CACAATTCTGTCCATATAAGTGACTTCCATATATGATTAAGTAACTAAGA
GGATATGAATGTGTACTTAAATTGATGAGTCTGCTGAGACACTCAGTGGG
CAAGACACATACCATCAAGCATTACCTAAGTTCAGTCCCTGGAACCTACA
TGGCAGACCCAGATAGTGGAGTCCTGAGAATCTCCTCTCATTCCCTCAGG
CATGCCATGGCAGACACAGAGATACAGATGCACACACACTCACACAGTAT
GTGCAAAGATGCGATTAAATAATGAGAGACAGTGTCAAATGGCATCCTAG
AGAATTAGAGAGCTTTTCTGCACTTAGGAATACATGAGAACATCGGCCTA
GAATACCATAGGATTGTATGAAAACAGTAACCTCAATTGAAATTTTCATC
TTGAGTTGGACTTCTTTTGTATTTCTACCCCAGGAAGAACCCCTTCGGTT
TTGTTTATAGTGTTTTTTAATGTATCAGATTTTAATTACATTGCTATTAT
TAATATTTATAGAAAACATAGTTTCTGTCTTCATAATTCGTGAACATTTA
GGAAGGATTTCTATTACAAAATCATGCATTGAGCCATCCAAGCCCCACCA
TGGAGAACCTAAGAATCTCTCAACACAGCACTAGATCACTAGAGAACT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCATCAGATGCCCCTGGACACACAG
GACTACCAGGTACTGGGAATGAGAGATGTTAACCATTCCCCAGCCCGCTA
AGATAAACATAGACCCACCTACTGTGTTTGCTATGTGTGGGCCTTCCACA
TCTTGGCAAGGCCAAGTCCATCTTCTCAGGTGACAGGCACAAACTCAGTG
GGGATTCCTGCTCCACCAACCCACATCACCCTTACATCCCAGACCTTGCG
TGTCTTTTCTGTCAATCACTGCTATTGTAGACTGGAGCCTCACTTGTGTG
AGCTGTGTGTGTTTGGTGTGCGCGCGCTTGTGTGTGTGCATGTGCATACC
TGTTTGGTTATAGCTGCCCATTCTTCTGCATGTGATGGCTGGAGGAGAGC
TTTGCAAATCTATATCACTTCTTATGATATATATGTACGCGTGCCCGTTG
TTCTCCCCCTATCTTTCCCCTCCTCTCTATCCCCTTACCTTCCCCTTTTG
TCTTCCCTAACTCCTACATTTCCCCCTTATTTATATGTTCCCCCTTATCC
TAATACCTCCATTATAACCTACCCTTTTCCCACTCTATCCTTCACATTTA
TATCCCCCCGTCTTCTTTTCCCTTTACCAATATCTTCTGTACTCACCATT
TCCTATCA

Query= MSMg01no063_m18.b1 MSMg01no063_m18.b1 CHROMAT_FILE:
MSMg01no063_m18.b1 PHD_FILE: MSMg01no063_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:18 2005
         (643 letters)



>mm_chr9_117146518_117147560
          Length = 1043

 Score = 1096 bits (567), Expect = 0.0
 Identities = 582/587 (99%)
 Strand = Plus / Minus

                                                                        
Query: 57   aagaggatatgaatgtgtacttaaattgatgagtctgctgagacactcagtgggcaagac 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 aagaggatatgaatgtgtacttaaattgatgagtctgctgagacactcagtgggcaagac 984

                                                                        
Query: 117  acataccatcaagcattacctaagttcagtccctggaacctacatggcagacccagatag 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  acataccatcaagcattacctaagttcagtccctggaacctacatggcagacccagatag 924

                                                                        
Query: 177  tggagtcctgagaatctcctctcattccctcaggcatgccatggcagacacagagataca 236
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 923  tggagtcctgagaatctcctctcattccttcaggcatgccatggcagacacagagataca 864

                                                                        
Query: 237  gatgcacacacactcacacagtatgtgcaaagatgcgattaaataatgagagacagtgtc 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  gatgcacacacactcacacagtatgtgcaaagatgcgattaaataatgagagacagtgtc 804

                                                                        
Query: 297  aaatggcatcctagagaattagagagcttttctgcacttaggaatacatgagaacatcgg 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  aaatggcatcctagagaattagagagcttttctgcacttaggaatacatgagaacatcgg 744

                                                                        
Query: 357  cctagaataccataggattgtatgaaaacagtaacctcaattgaaattttcatcttgagt 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  cctagaataccataggattgtatgaaaacagtaacctcaattgaaattttcatcttgagt 684

                                                                        
Query: 417  tggacttcttttgtatttctaccccaggaagaaccccttcggttttgtttatagtgtttt 476
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 683  tggacttcttttgtatttctaccccaggaagaaccccttaggttttgtttatagtgtttt 624

                                                                        
Query: 477  ttaatgtatcagattttaattacattgctattattaatatttatagaaaacatagtttct 536
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 623  ttaatgtatcagattttaattacattgctattgttaatatttatagaaaacatagtttct 564

                                                                        
Query: 537  gtcttcataattcgtgaacatttaggaaggatttctattacaaaatcatgcattgagcca 596
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  atcttcataattcgtgaacatttaggaaggatttctattacaaaatcatgcattgagcca 504

                                                           
Query: 597  tccaagccccaccatggagaacctaagaatctctcaacacagcacta 643
            |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  tccaagtcccaccatggagaacctaagaatctctcaacacagcacta 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no063_m18.g1 MSMg01no063_m18.g1 CHROMAT_FILE:
MSMg01no063_m18.g1 PHD_FILE: MSMg01no063_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:18 2005
         (295 letters)



>mm_chr9_117072814_117073508
          Length = 695

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatcagatgcccctggacacacaggactaccaggtactgggaatgagagatgttaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actcatcagatgcccctggacacacaggactaccaggtactgggaatgagaggtgttaac 260

                                                                       
Query: 61  cattccccagcccgctaagataaacatagacccacctactgtgtttgctatgtgtgggcc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 261 cattccccagcccgctaagataaacatagacccatctactgtgtttgctgtgtgtgggcc 320

                                                                       
Query: 121 ttccacatcttggcaaggccaagtccatcttctcaggtgacaggcacaaactcagtgggg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccacatcttggcgaggccaagtccatcttctcaggtgacaggcacaaactcagtgggg 380

                                                                       
Query: 181 attcctgctccaccaacccacatcacccttacatcccagaccttgcgtgtcttttctgtc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcctgctccaccaacccacaacacccttacatcccagaccttgcgtgtcttttctgtc 440

                                                            
Query: 241 aatcactgctattgtagactggagcctcacttgtgtgagctgtgtgtgt 289
           |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aatcactgctattgtagactcgagcctcacttgtgtgagctgtgtgtgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)