Query= MSMg01no064_e08.b1 MSMg01no064_e08.b1 CHROMAT_FILE:
MSMg01no064_e08.b1 PHD_FILE: MSMg01no064_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:04 2005
(428 letters)
>mm_chr9_71492130_71492959
Length = 830
Score = 549 bits (284), Expect = e-160
Identities = 354/408 (86%), Gaps = 50/408 (12%)
Strand = Plus / Plus
Query: 15 ggaatt-attgatttttgagtt-aagccttctttgctggccttgagcaccaggccggtct 72
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 259 ggaattcattgatttttgagtttaagccttctttgctggccttgagcaccaggcccgtct 318
Query: 73 tttatcaaaatcctgacaatgctacccccccccccccccccgagtttgagcttttctcag 132
||||||||| |||||
Sbjct: 319 tttatcaaa----------------------------------------------ctcag 332
Query: 133 tctctctgttactctctgaattccactggagagcagaacacatgtgtgtttctggtttag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctctctgttactctctgaattccactggagagcagaacacatgtgtgtttctggtttag 392
Query: 193 ggtcattccactctcacaaattattcctctttagcaattcaggttttcctgtcatc--ag 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 393 ggtcattccactctcacaaattattcctctttagcaattcaggttttcctgtcatctcag 452
Query: 251 aagtcctggtatttctttgtgtgggtttctctcaagtgttgagtattaggcttgtaaata 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aagtcctggtatttctttgtgtgggtttctctcaagtgttgagtattaggcttgtaaata 512
Query: 311 ctcacccccagctggtaactgctttgggcagttgcagacagactatcttgggactggtat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 ctcacccccagctggtaactgctttgggcagttgcagacagactatcttgggactgggaa 572
Query: 371 atggcaatgaattggaccacagtttgctgatagctctggcaatgatac 418
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 573 atggcaatgaattggaccacagtttgctgataactctggcaatgatac 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 830
Length adjustment: 9
Effective length of query: 419
Effective length of database: 821
Effective search space: 343999
Effective search space used: 343999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_e08.g1 MSMg01no064_e08.g1 CHROMAT_FILE:
MSMg01no064_e08.g1 PHD_FILE: MSMg01no064_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:04 2005
(356 letters)
>mm_chr9_71640531_71641281
Length = 751
Score = 553 bits (286), Expect = e-162
Identities = 337/360 (93%), Gaps = 13/360 (3%)
Strand = Plus / Minus
Query: 1 tgtgtttatgacatgatactggtaataagaaagtttcaaattttacagagttttgaatt- 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 tgtgtttatgacatgatactggtaataagaaagtttcgaattttacagagttttgaattt 492
Query: 60 ---ccccaccttatgttagaatctgagatgtctgtatgaacccaaagcccatattagaga 116
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tga----atcttatgttagaatctgagatgtctgtatgaacccaaagcccatattagaga 436
Query: 117 tgcttagcttgtattatagccacacaatacaataaaatacccacaagtctatactcaggt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 435 tgcttagcttgtattatagccacacaatacaataaaatacccacaagtctatactaaggt 376
Query: 177 aacccagataaccaagggggagataaagaatagttctctgcagatagaattccagttcct 236
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 375 aacccagataaccaagggggagataaaggatagttctctgcagatagaattccagttctt 316
Query: 237 atatgagtaataaatggggggttttatataatagtcaatgaaggaataagagattataat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 315 atatgagtaataaatggggggttttatataatagtcaatgaaggaataagagatt---at 259
Query: 297 atattgaatgattggttaataaaggaactttaaatttttttttaggcaaatccgagggta 356
|||| |||||||||||||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 258 atat--aatgattggttaataagggaactttaaagttctaattaggcaaatccgagggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 751
Length adjustment: 9
Effective length of query: 347
Effective length of database: 742
Effective search space: 257474
Effective search space used: 257474
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
