BAC Information

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BAC

Clone NameMSMg01-064N16
Chromosome9 (Build37)
Map Location 82,760,090 - 82,760,399
singlet/doubletsinglet
Overlap genePhip
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N16.T7 (MSMg01no064_n16.b1)MSMg01-064N16.TJ (MSMg01no064_n16.g1)
ACCAG290208AG290209
length742729
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no064_n16.b1 PHD_FILE: MSMg01no064_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005CHROMAT_FILE: MSMg01no064_n16.g1 PHD_FILE: MSMg01no064_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACACATACATTCTAGTTTGTATAAAAGGATTCCAAGAATTATG
CATCAAAACTAACATAGAAAGTGTCCACGGAACAGTAAAGAAGGTCCGAT
CAGTATGTACAAAAGAAAGAGCCTGCTACCGTGGAGCAAGGCTGCCACTT
ATGACACGGTGCTCCAGGTCTAGAAGAAATAAAAGAACATCCGTAAAGCT
AAATAATTTTAAAAACTCTGTCACTTATTACATACAACAGATCTGCTTGT
GTTTAACATTGCTTTCTGTACAAAATAAACATAATTTTAATTTGAAATGT
GTCAGTTATTATTTTATCCCTCCCACCCCAGTTGCTTTTTAAAATTGAGC
TATATTTAGACCTCTCACTATCCCATGATGGGATTAAGTAGTTTTCTTAA
TAACTTTTTAAGACCTGTCTCTTCTTGCTGTTTCAATATGGTCTAAAAAT
GTAACATTGTACCTTACTTTTAAATTTATTGTTGTGATAAACCAACACAC
ACATCCTTGAAAGTAATCAGCATATGTATCTGCATGTAAGTGCATGTACT
ATAATACAATCCTGAACCTATCTTCTTAGTTCTTTAAATGTAGAAACTCA
TCCATATACTACTATGTATTTGGTTTGTGCCATATAAGGTTAATTTCCTG
ATTTTTTTTATCTGCATTAAAAAAGTATTTCAAAACAGAGCT
NAAATCAATGATAGTGGTAGCCTGGCGGGCGGCCGGCCCGCCAACATTAA
GGGGACACAATAAAAGAATCCGGGAAATTCCAGGGAAGCCGGTAACTGGG
GGAAAGCCAAGCCGGTTTTTAAAAAGAAAGGAAAAGAAAGGAAAGGGAAA
GAAGAAAGAAAACCCCAAAAAATTGGTGGGTCCACCAAGTGGGGGTAATG
GCCTCCTTAACCGGGAAAAAAAAAACCCAAGAAAAAGGCCAACCCAAACC
TTGGCTGGGAACAAAAACCGGAAAACCGGTAAGGAAACCAATAAAAGAAA
AGGTGGAACAACAAGGGTGGGAATTTGGCCAACCTGGGTAACGAAGAAGG
GCAAAATCCCAAAAAAAATTTTTATTACCCACCCCCCGAGAAATTTGGCC
TCCTAATAAAAAAGTAAAAAACGCCCCCAAAAAAAGGAAAACCAAGCCTT
AAAAAGAACCCAAAGGCCCAAAATAAGAAAATCCTAAAGGGTAACTGGGA
AAAGGAATCCGGACCCTAACAAATAATCCTTAAGGCAAAAATCCTTAAGT
GGATGGCCTAATTGAATAAGGCCTTTAACCAAGTAAAATTTGGAACTTCC
TAACATTGGCCATTGGAAAACAATTAATCCACAAGTCCCAAAAATTTTTC
AACGGTGGCAAAATTAATTTTTAAAAAACATAAACATTTCAGAAAAGCCT
TAAATAATGGAAGGTGGTGGGCTCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n16.b1 MSMg01no064_n16.b1 CHROMAT_FILE:
MSMg01no064_n16.b1 PHD_FILE: MSMg01no064_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:07 2005
         (315 letters)



>mm_chr9_82759887_82760601
          Length = 715

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttacacatacattctagtttgtataaaaggattccaagaattatgcatcaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttacacatacattctagtttgtataaaaggattccaagaattatgcatcaaaa 263

                                                                       
Query: 64  ctaacatagaaagtgtccacggaacagtaaagaaggtccgatcagtatgtacaaaagaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaacatagaaagtgtccacggaacagtaaagaaggtccgatcagtatgtacaaaagaaa 323

                                                                       
Query: 124 gagcctgctaccgtggagcaaggctgccacttatgacacggtgctccaggtctagaagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagcctgctaccgtggagcaaggctgccacttatgacacggtgctccaggtctagaagaa 383

                                                                       
Query: 184 ataaaagaacatccgtaaagctaaataattttaaaaactctgtcacttattacatacaac 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataaaacaacatccgtaaagctaaataattttaaaaactctgtcacttattacatacaac 443

                                                                       
Query: 244 agatctgcttgtgtttaacattgctttctgtacaaaataaacataattttaatttgaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatctgcttgtgtttaacattgctttctgtacaaaataaacataattttaatttgaaat 503

                     
Query: 304 gtgtcagtta 313
           ||||||||||
Sbjct: 504 gtgtcagtta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)