Query= MSMg01no065_a15.b1 MSMg01no065_a15.b1 CHROMAT_FILE:
MSMg01no065_a15.b1 PHD_FILE: MSMg01no065_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:26 2005
(338 letters)
>mm_chr9_86863065_86863802
Length = 738
Score = 623 bits (322), Expect = 0.0
Identities = 334/338 (98%)
Strand = Plus / Plus
Query: 1 tcatctatgaccagaaccaagcttgagttccgtgctacttctgctgaccttgacttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctatgaccagaaccaagcttgagttccgtgctacttctgctgaccttgacttctgt 260
Query: 61 ctcagcgttcagagtttctggtgttgggttttgtattctccctgactccattcataccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcgttcagagtttctggtgttgggttttgtattctccctgactccattcataccct 320
Query: 121 ttcttctcatcagcattctgtaatttgatgtcccacaagcccttagtataagtccacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttctcatcagcattctgtaatttgatgtcccacaagcccttagtataagtccacagt 380
Query: 181 gtgccggtcccccacatagcctatgcttccttattatgtgacagtcctagctgaatgatc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccagtcccccacatagcctatgcttccttattatgtgacagtcctagctgaatgatc 440
Query: 241 tttttcctttgaaaattgtagcaatcataattcatagggtcaagttactggtgcaggatg 300
|||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 441 tttttcctttgaaaattgtagcaatcataattcagagggccaagttgctggtgcaggatg 500
Query: 301 ttatatatttggcaaacataaaccatatgatcttgttc 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatatatttggcaaacataaaccatatgatcttgttc 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_a15.g1 MSMg01no065_a15.g1 CHROMAT_FILE:
MSMg01no065_a15.g1 PHD_FILE: MSMg01no065_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:26 2005
(501 letters)
>mm_chr9_87017250_87018150
Length = 901
Score = 903 bits (467), Expect = 0.0
Identities = 493/503 (98%), Gaps = 5/503 (0%)
Strand = Plus / Minus
Query: 1 tctataatgtaaaacaaactaaagaaaattgacctgagtaccattttctgaagcccatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tctataatgtaaaacaaactaaagaaaattgacctgagtaccattttctgaagcccatag 840
Query: 61 ggtggaaagcatgcattggttcccagaagttgccctatgatctccagagaagcagccatg 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 839 ggtggaaagcatgcatcggttcccagaagttgccctatgatctccagagaagcacccatg 780
Query: 121 acacattcatgtgcacatgcatgtgataaagaaacaaacataaaaacaacaacaaa--aa 178
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 779 acacattcatgtgcacatgcatgtgataaagaaacaaacataaaaacaa-aacaaaacaa 721
Query: 179 aaaaccccaaaaaaacaaaaaaaccctcaaaacgacagaagatggctttcccttgtctaa 238
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaaaccc--aaaaagcaaaaaaaccctcaaaacgacagaagatggctttcccttgtctaa 663
Query: 239 agacttgcctccccttctgcaggggtttatcatcattcaggttttacatgattctggtta 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agactagcctccccttctgcaggggtttatcatcattcaggttttacatgattctggtta 603
Query: 299 tttcctggtattttatcttataaataggttcctttattccaccactctgttatgctgatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttcctggtattttatcttataaataggttcctttattccaccactctgttatgctgatg 543
Query: 359 ctacagagaggaacttcacctgcatacacaagctttctgaatcttacactcccttatggg 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 542 ctacagagaggaacttcacctgcatacacaagctttctgaatcttacactcccttacggg 483
Query: 419 agctgcagacacacttcaggggtgtttatcgttgttgcctaccaggaaattgcaatgact 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agctgcagacacacttcaggggtgtttatcgttgttgcctaccaggaaattgcaatgact 423
Query: 479 atcacaggacctctcgatcctga 501
|||||||||||||||||||||||
Sbjct: 422 atcacaggacctctcgatcctga 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
