BAC Information

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BAC

Clone NameMSMg01-065O24
Chromosome9 (Build37)
Map Location 72,424,842 - 72,425,233
singlet/doubletsinglet
Overlap geneRfxdc2
Upstream geneAA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik
Downstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O24.T7 (MSMg01no065_o24.b1)MSMg01-065O24.TJ (MSMg01no065_o24.g1)
ACCAG291029AG291030
length697695
length of high quality
(start - end)
397 (47 - 443)54 (147 - 200)
definitionCHROMAT_FILE: MSMg01no065_o24.b1 PHD_FILE: MSMg01no065_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:34 2005CHROMAT_FILE: MSMg01no065_o24.g1 PHD_FILE: MSMg01no065_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAAGGCTATCCAACAAAACAGTGACGAATGGGTTATCTAATG
AATCAAGGTACCAAACATCTAAAATGTGTTTCTTTAAAATTTTCATACCT
CGTAGTTAGAACTTTAAAAATTACACATTTAATGAAATGTTTAAGTAATC
TTTCAGTAAACGTCAGCGAGATTCAAAAACACAATTGCTTCCAACTGTGG
TTTTAGGACTGATGAGCTACACGAGAACATAAATAGTTAATAATGAAGGT
ACCCCGAGGGTTGGTTGTAAATGTAAAATTTATTCACAAAAACTCAAGAG
ATATTTAGAATCAATATTTATTTAATAATGGCAGATTGTGAGGTATTGTA
CTTACCAAAATGCAGTCCACTTTAGATTGTACAGTTTTGCTAGAAGACGA
ATATCAAGTGATAGTTAATACGAAGTATAGCATCTTTTAAGTATTAGAAC
TTCTCTTAAGCAGACACGGTAAATATACAAACTAAGGAAGCAGTGAAACA
TCTCATTACATACTGCATTTTGTTACAATACCTCCTGAATTACAAATGAA
AGCCGGGCGTGTGAAACATTTAGATATTTACCACAGTCTTACAAAAATAA
TGAAAACTAATTTTCCTTTCCCGGAAAGCCTATGAGCCAAGTGGGTG
GCAGTGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGTATTTCCCTTTCCCCCTCGCACT
TGTAGGCGACCAAAAAGAGAACTTTGAGCTTAAAAGAAAAAATCAGAAGT
TAGTAGATGAAAAATTCCGCAAATCATTGAACATACAAGTCATGAATAAG
TTGGAGAGGCAAGCCAAGAACCAAGTGGTGCAAAATGAAAACGACGAGAA
GGTGGAACGCCGGAGGGTCCTCAGAGTGCTGCAGAATGAGCAGTTTGAGC
TCGACATGGAAGAAGCCATCCAAAAAGTAAGTGTGCAGTGACCTTGATAG
TTTTCTTTCCTTGGAGGAGGTGAAAGATGGGTGTCAACCCTGCCTAAAGT
TGAGGAAATACAGAGAGCTGGGAGCTGACTTTAAAATCCTAGAATGTTTT
AAATGAATAACGTGGTGGCTGATAAGACAGGGGGGGTGCTTTTAACAACG
AGCAAATCAAATGACTTTAGAATAACATTTGACAGGGGGATCGGTTTTTG
TTTTTAAACATGGGCATGAGAACCATGGTTAGTTAGGGCACAGTTTTGTT
TATATAGATACAACCGAGATACCTGCTGTACATTTCTAAAAAAAAATTTG
GGTGGGAAACAGGGGTACAAAAAATTGGTGACATAAAAAATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o24.b1 MSMg01no065_o24.b1 CHROMAT_FILE:
MSMg01no065_o24.b1 PHD_FILE: MSMg01no065_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:34 2005
         (397 letters)



>mm_chr9_72424638_72425433
          Length = 796

 Score =  683 bits (353), Expect = 0.0
 Identities = 383/393 (97%), Gaps = 1/393 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaaggctatccaacaaaacagtgacgaatgggttatctaatgaatcaaggta 64
           |||||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||||
Sbjct: 596 gaattccaaaaggctaaccaacaaaacagtgacaaaaaggttatctaatgaatcaaggta 537

                                                                       
Query: 65  ccaaacatctaaaatgtgtttctttaaaattttcatacctcgtagttagaactttaaaaa 124
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 536 ccaaacatctaaaatgt-tttctttaaaattttcatacctcgtaattagaactttaaaaa 478

                                                                       
Query: 125 ttacacatttaatgaaatgtttaagtaatctttcagtaaacgtcagcgagattcaaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 ttacacatttaatgaaatgtttaagtaatctttcagtaaacgtcagcaagattcaaaaac 418

                                                                       
Query: 185 acaattgcttccaactgtggttttaggactgatgagctacacgagaacataaatagttaa 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 417 acaattgcttccaactgtggttttaggactgatgagctacacaagaacatagatagttaa 358

                                                                       
Query: 245 taatgaaggtaccccgagggttggttgtaaatgtaaaatttattcacaaaaactcaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taatgaaggtaccccgagggttggttgtaaatgtaaaatttattcacaaaaactcaagag 298

                                                                       
Query: 305 atatttagaatcaatatttatttaataatggcagattgtgaggtattgtacttaccaaaa 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 297 atatttagaatcaatatttatttaagaatggcagattgtgaggtattgtacttaccaaaa 238

                                            
Query: 365 tgcagtccactttagattgtacagttttgctag 397
           |||||||||||||||||||||||||||||||||
Sbjct: 237 tgcagtccactttagattgtacagttttgctag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 796
Length adjustment: 9
Effective length of query: 388
Effective length of database: 787
Effective search space:   305356
Effective search space used:   305356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)