BAC Information

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BAC

Clone NameMSMg01-066B23
Chromosome9 (Build37)
Map Location 76,256,028 - 76,256,452
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B23.T7 (MSMg01no066_b23.b1)MSMg01-066B23.TJ (MSMg01no066_b23.g1)
ACCAG291171AG291172
length721723
length of high quality
(start - end)
425 (75 - 499)444 (69 - 512)
definitionCHROMAT_FILE: MSMg01no066_b23.b1 PHD_FILE: MSMg01no066_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:49 2005CHROMAT_FILE: MSMg01no066_b23.g1 PHD_FILE: MSMg01no066_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAACGNGGAATCCTAG
AACATATTTACCAAAAACATTATATGTATTTACATGATGTCTCTGTGAGG
ATTCCTTTTCTCAATATCCCCACTGATGTTTTTACTTTTCATTGGCTATC
ATCTTCTCCATGATAACCATATTAAGGGGCTGTTTAATTTGCATTTCTCC
AGCCAATGATAATTATGTTGATCATCTTCTCATACATCTTTTGGCCATAT
GTATATCTTGTTTTGACAAATGTATAATCAGAATACTGAAAATTGATTTC
GGTTAGCTTATAAAATAATATGTTTCTATAAATGCCGTTTCATAATCGTT
AGCTTGGTTTAATTATTGCAACTTCCCCTCATTCTCTCTATCATTTTTTT
CCAACCCCCTTGAATTTTTTATTCCCTAATATTCCTTGTTTAACTTTCAT
ATTACATGTGTTTTGTTATCTCCTCTCCTTCAGACCTCTTCCCTGATCCT
AACAATCACAGCTGTTTTCTGGCTACCTGGGCTATCCTGACACTCTGTCC
AACTTAAACAGAGCTATCTGAAGATACAGTTGTAATATTTTTTAAAGAGA
CTTATATCGTGTTGTCTTGCTGGGCCTGGATTGCCTCACTCAATATTTTC
CATTTCTACTTATTTCTTGTAAATTCCATAATTTAATTGCTTGTTACTGC
TGAGTAAAATAACATTGTGCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCAATCAGTTGGTTGGGATCTAACTTTATCTCCCTCCCTTC
TCCCTTATTATCAAATCAGTCTCTAGAGAAAGTCTGCTCTCTGTTTTGTT
TGGATTATTTGTTTTTGTTTTTGAGACAGGGCCTTTCTTTAACTCTAGCC
CTCCTGTAATTCACTCTGTAGACCAGGCTGACCTCAAACTCAAGAGATTC
TACTGCCTCTACCTCCAGAGTGCTGGGATAAAAGACATGCCCCACCACAG
ACCTGGTGTGACAAAGTCTACTCTTGATAGTGTTCCTGTGACCTAATCAC
TACTGACAGGCTCGTCTCTTAAAGGCCCTCACACCTTTCATGAGTCATGT
TGGGGTCCAAACTTGAACACTTGAAACTTGGAGGGGAGCCATATTCAAAC
CACAGAACATCTATGAAGAGAGCAATGTGATCACTTTCCAACTTTATGGC
ATTGCCTTCTGTACCCTGTAGTTCCTTACTGTGGGTACCAATTGTACGAT
GCATATAGCGATCCTTGATCTCCCTTCCCACTAGAAGCCAGTAGCATCTC
TTCCCGAAAGTGTTTGCTTTTAAAAACTCTTCTATATATTGTTTCCTGGT
ACCAGTCTCTGTTTAATAGTGAATCTGAATGAATATTATCTGGAAAAAAA
AGCTGATTTCTCGAGATTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b23.b1 MSMg01no066_b23.b1 CHROMAT_FILE:
MSMg01no066_b23.b1 PHD_FILE: MSMg01no066_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:49 2005
         (425 letters)



>mm_chr9_76255828_76256652
          Length = 825

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatttacatgatgtctctgtgaggattccttttctcaatatccccactgatgttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgtatttacatgatgtctctgtgaggattccttttctcaatatcctcactgatgttttta 260

                                                                       
Query: 61  cttttcattggctatcatcttctccatgataaccatattaaggggctgtttaatttgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttcattggctatcatcttctccatgataaccatattaaggggctgtttaatttgcat 320

                                                                       
Query: 121 ttctccagccaatgataattatgttgatcatcttctcatacatcttttggccatatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctccagccaatgataattatgttgatcatcttctcatacatcttttggccatatgtat 380

                                                                       
Query: 181 atcttgttttgacaaatgtataatcagaatactgaaaattgatttcggttagcttataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttgttttgacaaatgtataatcagaatactgaaaattgatttcggttagcttataaa 440

                                                                       
Query: 241 ataatatgtttctataaatgccgtttcataatcgttagcttggtttaattattgcaactt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 441 ataataagtttctataaatgccgtttcataatcgttagcttggtttaaccattgcaactt 500

                                                                       
Query: 301 cccctcattctctctatcatttttttccaacccccttgaattttttattccctaatattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccctcattctctctatcatttttttccaacccccttgaattttttattccctaatattc 560

                                                                       
Query: 361 cttgtttaactttcatattacatgtgttttgttatctcctctccttcagacctcttccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtttaactttcatattacatgtgttttgttatctcctctccttcagacctcttccct 620

                
Query: 421 gatcc 425
           |||||
Sbjct: 621 gatcc 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)