Query= MSMg01no066_c23.b1 MSMg01no066_c23.b1 CHROMAT_FILE:
MSMg01no066_c23.b1 PHD_FILE: MSMg01no066_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:53 2005
(461 letters)
>mm_chr9_38961976_38962836
Length = 861
Score = 847 bits (438), Expect = 0.0
Identities = 453/458 (98%)
Strand = Plus / Minus
Query: 4 ggaattccatggagaactcaactgtgtggcatgcttttgtcattctttgataccaattat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaattccatggagaactgaactgtgtggcatgcttttgtcattctttgataccaattat 439
Query: 64 cttcttatcctcatattttctaagacactaagtgtaaagaagatggatgtttccagttaa 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 cttcttatcctcatattttctaagacactacgtgtaaagaagatggatgtttccagttaa 379
Query: 124 aaaggtagtttaggcactgcctttgcaaaatacaggaaagggaagtcttgatgagaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaggtagtttaggcactgcctttgcaaaatacaggaaagggaagtcttgatgagaaaga 319
Query: 184 agagtctgtatgtaaatatataaaagagaatacatattagaaatttacaaagggagatat 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 agagtctgtatgcaaatatataaaagagaatacatattagaaatttacaaagggaaatat 259
Query: 244 agcatgttcagaaaataggaaacaaacaagccaataaacaaaaaccagaaagatgtgctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcatgttcagaaaataggaaacaaacaagccaataaacaaaaaccagaaagatgtgctg 199
Query: 304 ttgattggcctgatgtttatattctgatgataattctgcttccttaaaaggggttaccca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgattggcctgatgtttatattctgatgataattctgcttccttaaaaggggttaccca 139
Query: 364 ctatgatcaatccatcacttactcgggtgatatcatgtgaaccttctctgagtttaactt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ctatgatcaatccatcacttactcgggtgatatcatgtgaaccttctctgagtttaactt 79
Query: 424 gtcaataaagtttagagcctgtgactgggcagtgaagg 461
||||||||||||||||||||||||||||||||| ||||
Sbjct: 78 gtcaataaagtttagagcctgtgactgggcagtcaagg 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_c23.g1 MSMg01no066_c23.g1 CHROMAT_FILE:
MSMg01no066_c23.g1 PHD_FILE: MSMg01no066_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:53 2005
(395 letters)
>mm_chr9_38779209_38780003
Length = 795
Score = 621 bits (321), Expect = 0.0
Identities = 366/395 (92%), Gaps = 23/395 (5%)
Strand = Plus / Plus
Query: 1 tgtatctaatagtggggtccaaatctctgaaaatattagtgaaggaaatttttcaaaagc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 217 tgtatctaatagtggggtccaaatctctgaatatattagtgaaggaaatttttcaaaagc 276
Query: 61 atcgtgtctgggcttgagactggggagttcatgcacatgtttgtctcagccacatggtga 120
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 277 atcgtgtctgg----------------ttcatgcacatgtttgtctcagccacatggtga 320
Query: 121 tgatatcttgagtactttaccttatttagtttctcttcttaaacttagcacctctctcaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatatcttgagtactttaccttgtttagtttctcttcttaaacttagcacctctctcaa 380
Query: 181 aggccccaaagaaagtataaataattctttattttcttttttctttttgaattttaagtt 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aggccccaaagaaagtataaataattctttattttcttttt-------gaattttaagtt 433
Query: 241 gcctaaagacattcataataaattattttctgtaaaaggaaatcaatatacttagtttaa 300
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 gcctaaagacaagcaaaataaattattttctgtaaaaggaaatcaataaacttagtttaa 493
Query: 301 aaaaggaactgatatataacttaatttgtgtcctgatagatgatttgtaaatacgaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaaggaactgatatataacttaatttgtgtcctgatagatgatttgtaaatacgaaata 553
Query: 361 agtactttctttccaaccatcatcgttactcctgg 395
|||||||||||||||||||||||||||||||||||
Sbjct: 554 agtactttctttccaaccatcatcgttactcctgg 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
