BAC Information

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BAC

Clone NameMSMg01-066G10
Chromosome9 (Build37)
Map Location 61,078,222 - 61,161,929
singlet/doubletdoublet
Overlap genenone
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066G10.T7 (MSMg01no066_g10.b1)MSMg01-066G10.TJ (MSMg01no066_g10.g1)
ACCAG291382AG291383
length690693
length of high quality
(start - end)
271 (45 - 315)270 (86 - 355)
definitionCHROMAT_FILE: MSMg01no066_g10.b1 PHD_FILE: MSMg01no066_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:11 2005CHROMAT_FILE: MSMg01no066_g10.g1 PHD_FILE: MSMg01no066_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,161,663 - 61,161,929)(61,078,222 - 61,078,490)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCTCACCCCGAAGTCAAGCACACAGGCAACCTGTGGCCTCCGG
ATTGGCCACTTCTTCTGAAGCCATAACCCGCCTGGGACATAGTGGACAGT
ATATTTATTTGTGGCCATCCAAAGAGGAAGCTCTACAGGGGAGTCCGTGT
AATCAAGCTCTCTTTTTAAATCTTAGTTCCTCGACTCACTCTGGATTGCA
GACATCTGCATGTGTCAGTCTGCTGTGAAGGTCTGAGCTGGCTGTGGACG
AACAGGGAGAGAAGGTTCTCATAACATATTCCCACGTACAGGGTACCCTG
ATAGTCTCAAAGCAATAAACGGGCCTGCCATTTCCCCATTCCCAACTCGT
ACAGACTGATGTTTTATTTGATGGCCAAACTGATTTCATTTTCTTTAAGA
GATATTCTCCCAGGGGCTAGAGAGACAGACGGCTCACTGTGTAAAGTGTT
TGCCAGGCTTGCGTGACGCCCTTGTGTTTGTATCCCCAGCATCCTGTTTC
AATCTGGGCAGAGCCTTTACCCATTTGTCATCCCAGCACTGGCCCTAGGA
GGACGTGGAGATGCTCAGGTTTCCTGTTGTGTCCGCATCTAGTCATGTCC
ATCAGTGAGCTCTATGTCCAACGACTGTCCTGCCTTTTTT
TTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATTTGGAAAGGACT
CAGCTAAAGTATGAATACGGCTTCAGGGAAACAGTGCCCCCAAATCTCCT
GGCACTAGGACCCCCTGCCAGCTATCCTCTCCCGATGACATTGTTCCCAG
CCTCTCCGTCTCCTTATCTGCCATATGCAGAAAATAATCCCACTGTGACA
AAGTCCCAGGAGGACCAAACAGGATCCAGCACAGTAAACATTCAATTACC
AGTCCCACAAACACAAGGGGTTGCTACTCACACACACTCACACACACACA
CACAGAGCATGATGAGCCTGGCCGTGGAAGATAGACCAGGATGTGTCCCT
ATGAGGAAGGATGTGTCATCAAGGATTGTGTTAGCCACACAGGTTTCAGA
GCACAGTCGGAGGCCAGAATGTGCCACTGCCCTTAACAGCCACTTAGGGC
GGGACTCACTGAATCATGTGATTGTCCACCTTGCATGTCACCTTGACTGT
ACCCAGGTTCTTCCAAGAATCGTACCCCTGATCATAAACCAGCTCATGCT
GCATCATTTCCTGTACACAGTAACCGAATAGTAAAAGAACTCTCTGCGTG
CCATTTATAAACACCCCACTTCACTGTTTATAATCTATTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_g10.b1 MSMg01no066_g10.b1 CHROMAT_FILE:
MSMg01no066_g10.b1 PHD_FILE: MSMg01no066_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:11 2005
         (271 letters)



>mm_chr9_61161459_61162129
          Length = 671

 Score =  470 bits (243), Expect = e-137
 Identities = 261/267 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagctcaccccgaagtcaagcacacaggcaacctgtggcctccggattggcca 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattccaagcacacaccgaagtcaagcacacaggcaacctgtggcctccggattggcca 412

                                                                       
Query: 65  cttcttctgaagccataacccgcctgggacatagtggacagtatatttatttgtggccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cttcttctgaagccataacccgcctgggacatagtggacagtatatttatttgtggccat 352

                                                                       
Query: 125 ccaaagaggaagctctacaggggagtccgtgtaatcaagctctctttttaaatcttagtt 184
           |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 351 ccaaagaggaagctctatgggggagcccgtgtaatcaagctctctttttaaatcttagtt 292

                                                                       
Query: 185 cctcgactcactctggattgcagacatctgcatgtgtcagtctgctgtgaaggtctgagc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cctggactcactctggattgcagacatctgcatgtgtcagtctgctgtgaaggtctgagc 232

                                      
Query: 245 tggctgtggacgaacagggagagaagg 271
           |||||||||||||||||||||||||||
Sbjct: 231 tggctgtggacgaacagggagagaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no066_g10.g1 MSMg01no066_g10.g1 CHROMAT_FILE:
MSMg01no066_g10.g1 PHD_FILE: MSMg01no066_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:11 2005
         (270 letters)



>mm_chr9_61078022_61078691
          Length = 670

 Score =  482 bits (249), Expect = e-140
 Identities = 264/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttggaaaggactcagctaaagtatgaatacggcttcagggaaacagtgcccccaaat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gatttggaaaggactcagctaaagtatgaatatggcttcagggaaacagtgcccccaaat 260

                                                                       
Query: 61  ctcctggcactaggaccccctgccagctatcctctcccgatgacattgttcccagcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggcactaggaccccctgccagctatcctctcccgatgacattgttcccagcctct 320

                                                                       
Query: 121 ccgtctccttatctgccatatgcagaaaataatcccactgtgacaaagtcccaggaggac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgtctccttatctgccaaatgcagaaaataatcccactgtgacaaagtcccaggaggac 380

                                                                       
Query: 181 caaacaggatccagcacagtaaacattcaattaccagtcccacaaacacaaggggttgct 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacaggatccagcacagcaaacattcaattaccagtcccacaaacacaaggggttgct 440

                                        
Query: 241 actcacacacactcacacacacacacaca 269
           || ||||||||| ||||||||||||||||
Sbjct: 441 acacacacacacacacacacacacacaca 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)