BAC Information

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BAC

Clone NameMSMg01-066N18
Chromosome9 (Build37)
Map Location 60,508,719 - 60,684,275
singlet/doubletdoublet
Overlap geneLrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
Upstream genePkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942
Downstream geneA430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N18.T7 (MSMg01no066_n18.b1)MSMg01-066N18.TJ (MSMg01no066_n18.g1)
ACCAG291733AG291734
length685763
length of high quality
(start - end)
499 (52 - 550)352 (128 - 479)
definitionCHROMAT_FILE: MSMg01no066_n18.b1 PHD_FILE: MSMg01no066_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:48 2005CHROMAT_FILE: MSMg01no066_n18.g1 PHD_FILE: MSMg01no066_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,683,777 - 60,684,275)(60,508,719 - 60,509,067)
sequence
GGCGGCCGCCTGGCTTCCAAATAAGGGNGACCTATAGAAGGATTTCTGAA
ATTCTTTCAGAAACAATGAGGTATTTTCCTCCCAGACCGCATGAGATACC
AAGGCGTCACTTGGCCCCAGAGACTCCACCCAGCCTAGTCTCTCTTCTTC
AGGGGAGATCCAGGCTGGAACTCAGACCTTGGCCTTTTGGGTAACAGAGC
AAGCACATTCTTTCTAGAAATAGTCAGCAAAGGCAGAGAAAATATAAAAG
GAGGGGAACCTGGAAGGACTCTCCAGAATCACACAAGGGCCTCTCAATTC
ATGTTATAGGCTACGTGCACCCCTGCAGATGGCTGCCCCAGATGCCACCA
TCCAGCCCTAAGCACACCCACCGCCACGGTGGCTTCCTAAGGACCAGAGT
ACAGCCATGACTCTGCTGCCTGCAGACCTGGAAGGCTATTCCCTAGCTTC
CACTTGGGTCACTCTCAAAATGTCCTGTCTTCAGAGGTCTCCTCAACCCC
TATGCCTGAGCATGCTGCCCACCACTCCCCGCTACGCACCCCTCTAACTG
GTACACGGGATCCTTCTTCAAACTGCAGTCACCTCTGTCCTTACACTAAT
TCCACCCATCCCTCTATGATCCCTCCAACGATTACTCTCAACAGAGGTCT
CAGTTCTCTGTCTCGAAGTCATGAATCTGACTTTT
NNCCCCNNNNNNNNCCCCCCCCCNNNAATCCCCNNTCNCTACCACCAAAG
CCCGCTCTATAATTGCGGCGCTAAACGACTCACTATATTCAGAAATACGC
GGAATTCTTCCTGCTCTCACCTCCATAAAGGCCTGCCTCCAATAACAATA
GCTAGATGCAGTACATTTCCTTTAAAATAGAGAATAATCCAAGAATCCAC
CTGCTCTTTTGCTTCAGCCTCATGCTAAAGGTTTTTCTAGCCCAGTGGAA
AACAGAGCCATCAAACTCAGAGTCTAGTGAGAGGCCTCCACTTGATGGCT
CCTTCTACACATCTTCACATGACAGAGGGGCAGCAGGCTTCCCTTCCCTG
CCTCTCAAACCTTTCACACTGGTATCAAGGCCTCAATATAAATTTTGGTG
GTAGACAAGCATGCCAACATACAGTAAATATATAATGTTTAGTAGGAAAC
TGCTATTATTTGCTTAGGAAAAAAAACAACCACCAGTTGAAGTTTTGTCC
TTTACTGTATATTGTAATGCCAAGTGCTGGCCTCCAAGATCTGGAGTCTG
CACAAAGCCCGAGGGACCCTCAGTTAATTATCCCAGTTAATTCTGATTGG
TGAACAAAGATGCCTTAACCCATTAGTTGAGTAGAAGAGACATATGAAGT
GTTTTATGTTTCCCTGGGCTTACAAACTGTGAAGGAAGAAGAAGTATATC
GCCCATGGCCACAAATAAGAAGTCTTCTGAAACTAAGACAAATACTTAAT
ATATTAATATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n18.b1 MSMg01no066_n18.b1 CHROMAT_FILE:
MSMg01no066_n18.b1 PHD_FILE: MSMg01no066_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:48 2005
         (499 letters)



>mm_chr9_60683577_60684475
          Length = 899

 Score =  864 bits (447), Expect = 0.0
 Identities = 486/499 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttcagaaacaatgaggtattttcctcccagaccgcatgagataccaaggcgtcact 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 699 ttctttcggaaacaatgaggtattttcctcccagaccgcatgagataccaaggggtcact 640

                                                                       
Query: 61  tggccccagagactccacccagcctagtctctcttcttcaggggagatccaggctggaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 639 tggccccagagactccacccagcctagtctctcttcttcaggggagatccgggctggaac 580

                                                                       
Query: 121 tcagaccttggccttttgggtaacagagcaagcacattctttctagaaatagtcagcaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 579 tcagaccttggccttttgggtaacagagcaagcacattctttctagaaatagccagcaaa 520

                                                                       
Query: 181 ggcagagaaaatataaaaggaggggaacctggaaggactctccagaatcacacaagggcc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggcagagaaaataaaaaaggaggggaacctggaaggactctccagaatcacacaagggcc 460

                                                                       
Query: 241 tctcaattcatgttataggctacgtgcacccctgcagatggctgccccagatgccaccat 300
           |||||||||| |  | |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 459 tctcaattcaggagacaggctacgtgtacccctgcagatggctgcctcagatgccaccat 400

                                                                       
Query: 301 ccagccctaagcacacccaccgccacggtggcttcctaaggaccagagtacagccatgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 ccagccctaagcacacccaccgccacggtggcttcctaaggaccagagtacagccctgac 340

                                                                       
Query: 361 tctgctgcctgcagacctggaaggctattccctagcttccacttgggtcactctcaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctgctgcctgcagacctggaaggctattccctagcttccacttgggtcactctcaaaat 280

                                                                       
Query: 421 gtcctgtcttcagaggtctcctcaacccctatgcctgagcatgctgcccaccactccccg 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtcctgtcctcagaggtctcctcaacccctatgcctgagcatgctgcccaccactccccg 220

                              
Query: 481 ctacgcacccctctaactg 499
           |||||||||||||||||||
Sbjct: 219 ctacgcacccctctaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no066_n18.g1 MSMg01no066_n18.g1 CHROMAT_FILE:
MSMg01no066_n18.g1 PHD_FILE: MSMg01no066_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:48 2005
         (352 letters)



>mm_chr9_60508519_60509270
          Length = 752

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/349 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcctgcctccaataacaatagctagatgcagtacatttcctttaaaatagagaataa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaggcctgcctccaataacaatagctagatgcagtacattttctttaaaatagagaataa 260

                                                                       
Query: 61  tccaagaatccacctgctcttttgcttcagcctcatgctaaaggtttttctagcccagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaagaatccacctgctcttttgcttcagcctcatgctaaaggtttttctagcccagtg 320

                                                                       
Query: 121 gaaaacagagccatcaaactcagagtctagtgagaggcctccacttgatggctccttcta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gaaaacagagccatcaaactcagagtctagtgagaggccttcacttgatggctccttcta 380

                                                                       
Query: 181 cacatcttcacatgacagaggggcagcaggcttcccttccctgcctctcaaacctttcac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cacatcttcacatgacagaggggcagcaggctttccttccctgcctctcaaacctttcac 440

                                                                       
Query: 241 actggtatcaaggcctcaatataaattttggtggtagacaagcatgccaacatacagtaa 300
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 actggtaacaaggcctcaatataaattttggtgggagacaagcatgccaacatacagtaa 500

                                                            
Query: 301 atatataatgtttagtaggaaactgctattatttgcttaggaaaaaaaa 349
           ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 atatataatgtttagtaggaaactgctattatttgtttaggaaaaaaaa 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)