BAC Information

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BAC

Clone NameMSMg01-067A12
Chromosome9 (Build37)
Map Location 39,508,063 - 39,508,342
singlet/doubletsinglet
Overlap genenone
Upstream geneLoh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1
Downstream geneOlfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067A12.T7 (MSMg01no067_a12.b1)MSMg01-067A12.TJ (MSMg01no067_a12.g1)
ACCAG291865AG291866
length705701
length of high quality
(start - end)
509 (46 - 554)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no067_a12.b1 PHD_FILE: MSMg01no067_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:01 2005CHROMAT_FILE: MSMg01no067_a12.g1 PHD_FILE: MSMg01no067_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATATATTGGACAAAAAAGAAATTCCTCCTATCACATAAAAGT
CAAAACAGCAAATACAAAAAAATCAAAGAAAGACTATTATAAGCAGTAGT
GGAAAAAGGACAAGTAACATATAAAGGCAGACTTATCAGAATTATACCTG
ACTTCTCAACAGAGACTATGAAAGCCAGAAGATCCTGGGCAGATGTCATA
CAGACCCTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCAAA
ATTCGCAAAAACCATTGATGGGGAAAGCAAGATATTCCATGACAAAACTA
AATTTACATTATATCTATCCCGCCCACCAAAGCTTAATAGATGGAAAACA
CCATCAAAAGGAGGGAAACTACACCCTAGAAAAAGCAAGAAAGAACTCTT
TCAACAAACCCAAAAGAAGATAGCTACACAAACATAAAAATAACTTCAAA
AATAAGGGGAAGCAACAATCACTATTCCTTAATATCTCAACATCAAAGGA
CTCAATTCCCCACTAAAAAGACATAAACTAAAAGACTGGATACATAATCA
GGAGTCAACATTTTCCTGCATACATGAAATGCACCTCAGGGACAAAGACA
GAGACTTACTTCTGAGTAAAGATCTATAAAACAATTCTCCTAGTAAATGG
CCCCT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAAATTCCTTTAGGCTCTTGTTTATT
TGAAAACAGAAGCTCCTATCAACTCAGTTTTAAGGTCTTCAAGCAGAGAT
AACGTTGCTGGATTATTCTGATAGGTTCCATTACTATTCTCTGATTCCAA
CAGGAGCATGCAGAAGAAAACTGAGTCTCTTCATGTTCTTTTCTCTACGG
TTGTTAGGAAGAGCTTCACAGCACATAATCGAATGGCTAATAAGTTCAGT
TTTCAAAATTTCATGCTAACTTCTCATTTGTAGTTTATTTCTGCTGAAAA
CATTATTATAAAGTGCTGTAAGATAAACCTAAGTCTAGATCTGTGTCCTA
GCAGGTATAAGCTGAAAAGGAAAAAGTGAATGTGATGCTGTACAGTATCT
AGATTACTGCCATTGAATTCAGGATTCTGCCACAAGGTTGCTTATCCCTC
CACTCAAGCTCTGTTCTTTATGCAATATAATTGTGTTTCATTGTAACTAG
ACAGTATTTGAAAAATAAACATCATATCTCTCAGAATTCAATATCCCCTT
AGGTGAATAAATCTATACATTAGTTAATGTACATATTTTATGAGATTATC
TTTTCAGCCTAGATGATCCTTTCCTCACGAATACTATTTTGCGGAAGACG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_a12.g1 MSMg01no067_a12.g1 CHROMAT_FILE:
MSMg01no067_a12.g1 PHD_FILE: MSMg01no067_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:01 2005
         (282 letters)



>mm_chr9_39507863_39508544
          Length = 682

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaattcctttaggctcttgtttatttgaaaacagaagctcctatcaactcagtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cagaaattcctttaggctcttgtttatttgaaaacagaagctcctatcaactcagttcta 260

                                                                       
Query: 61  aggtcttcaagcagagataacgttgctggattattctgataggttccattactattctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcttcaagcagagataacgttgctggattattctgataggttccattactattctct 320

                                                                       
Query: 121 gattccaacaggagcatgcagaagaaaactgagtctcttcatgttcttttctctacggtt 180
           |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 321 gattccaacaggagcatgcagaagaaaactgagtctctccgtgttcttttctctacagtt 380

                                                                       
Query: 181 gttaggaagagcttcacagcacataatcgaatggctaataagttcagttttcaaaatttc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gttaggaagagcttcacagcacataatcgaatgactaataagttcagttttcaaaatttc 440

                                                   
Query: 241 atgctaacttctcatttgtagtttatttctgctgaaaaca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctaacttctcatttgtagtttatttctgctgaaaaca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)