BAC Information

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BAC

Clone NameMSMg01-067G02
Chromosome9 (Build37)
Map Location 17,570,022 - 17,702,842
singlet/doubletdoublet
Overlap geneLOC100040508
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G02.T7 (MSMg01no067_g02.b1)MSMg01-067G02.TJ (MSMg01no067_g02.g1)
ACCAG292129AG292130
length691725
length of high quality
(start - end)
289 (73 - 361)175 (67 - 241)
definitionCHROMAT_FILE: MSMg01no067_g02.b1 PHD_FILE: MSMg01no067_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005CHROMAT_FILE: MSMg01no067_g02.g1 PHD_FILE: MSMg01no067_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,570,022 - 17,570,310)(17,702,668 - 17,702,842)
sequence
TATCTATATTTGCGGCGCTATACGACTCCTATAGCGAGAGGATCCGCGGA
ATTCTAAGAAATTACTTCTGCAATAATATAATTGACAATAGAATAATGCA
ATTTTGTCAGCTCTTGTCAACTTGACATCTACACATAATTCTTATCCATA
CACAGTTTTTGAATCATCTATGTTTTTCCTAACATAGTATTAAAGATATA
TAATACCTTTAGTTTTATAAAATTATAAATATGTAAATGAATCCTTGGTC
AAGATACCCCAAAGCCCAAATCTCCATTTTGGGTGATGTTTATTCTTCTT
CTAGCAGGTAAAGACTTCCAGGCATCTATAACGTCAGTGATGGAAGGTCA
ACATCTATGTATATGACCTCCGCCCCCGTACTCATTGTGTGGATACATGT
GAACATGTATATATGTCTGTTTCTTATATGTCTCAAAAATGGTTCATACT
TTGTTTCTGGTCATGACCAATACTCAGTTCTTTAGTCTGATACTTGAATG
TCAAGCTCATTCTCATAAAGGTGCCTATTGCCTATCCTTGTAATTATCCT
TATATGACTTCATGTATAGCTTACCACCATTCCTTTTATTATGTCCTGCC
CAGTTTTCCGCCTTCCTTGCTATCTGCTTAATAGATCACGCACATATGTA
TCACAGATCCCTCATGACCTTGTTGTTTATGTTACCTTCCC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATTGGATTTGTTCCATAAAAATGAATATGAGTA
ATTGATAAAAATGGGTAAGGAAAACATTGAATAATTTATACAAGCTATTT
GAGGTCATTTTTTTTTTACAAAGCATTTAGGATGTGAGACAATCATAATG
CATTGAGTGCTATAAAAAGACACAAGGAGTTTTAAATTCAGGGATAATTA
GCACAGAGCAAATATGTCACCTAATCAACTGGGATGAGTCATCATCTTCT
AAAGCTGAAATGCGAGGTTGCTCTTCTGCATCACTGACGAACATGTACCA
TGTTGTTATATCGCCTAGTATTAGCGACTGTTTATTGACCTTTCTCATTA
CCGTCCCGCCCGTTCCCATACAATATCCTTATGACGTTGATCCTCACTCC
TTCTCCTATGTGCATCCTTTGACGCTCCAACTGAATCCCACCCCATTATT
TGACGCATTAAATCTTTTTTATCCCTTCCCCGAATTTTCCTCTTATGATT
TTTTTTACATTCTATCATGTTTCCTCATCACAACAACTTCAGTTACCTCA
TACACCTCGTAATTTGAACCCTTCATTACTTATATTCTCTGTTACCGTCT
CTCTTTTTCTTCCTTACTGTTGTTCACTCTACCCTCACAATTCATTCTCA
CTTTTCTTGTTTCCCCACCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g02.b1 MSMg01no067_g02.b1 CHROMAT_FILE:
MSMg01no067_g02.b1 PHD_FILE: MSMg01no067_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:28 2005
         (289 letters)



>mm_chr9_17569822_17570510
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatataattgacaatagaataatgcaattttgtcagctcttgtcaacttgacatctac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatataactgacaatagaataatgcaattttgtcagctcttgtcaacttgacatctac 260

                                                                       
Query: 61  acataattcttatccatacacagtttttgaatcatctatgtttttcctaacatagtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataattcttatccatacacagtttttgaatcatctatgtttttcctaacatagtatta 320

                                                                       
Query: 121 aagatatataatacctttagttttataaaattataaatatgtaaatgaatccttggtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatatataatacctttagttttataaaattataaatatgtaaatgaatccttggtcaa 380

                                                                       
Query: 181 gataccccaaagcccaaatctccattttgggtgatgtttattcttcttctagcaggtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gataccccaaagcccaaatctccattttgggtgatgtttattcttcttctagcagataaa 440

                                                            
Query: 241 gacttccaggcatctataacgtcagtgatggaaggtcaacatctatgta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacttccaggcatctataacgtcagtgatggaaggtcaacatctatgta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_g02.g1 MSMg01no067_g02.g1 CHROMAT_FILE:
MSMg01no067_g02.g1 PHD_FILE: MSMg01no067_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:28 2005
         (175 letters)



>mm_chr9_17702468_17703042
          Length = 575

 Score =  323 bits (167), Expect = 4e-93
 Identities = 173/175 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattggatttgttccataaaaatgaatatgagtaattgataaaaatgggtaaggaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aattggatttgttccataaaaatgaatatgagtaattgataaaaatgggtaaggaaaaca 316

                                                                       
Query: 61  ttgaataatttatacaagctatttgaggtcattttttttttacaaagcatttaggatgtg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgaataatttatacaagctatttgaggtcattttttttttacaaagcatttaggatgtg 256

                                                                  
Query: 121 agacaatcataatgcattgagtgctataaaaagacacaaggagttttaaattcag 175
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agacaatcagaatgcattgagtgctataaaaagacacaaggagttttaaattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)