BAC Information

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BAC

Clone NameMSMg01-067G19
Chromosome9 (Build37)
Map Location 73,215,134 - 73,215,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneUnc13c, Wdr72, Nr1h2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G19.T7 (MSMg01no067_g19.b1)MSMg01-067G19.TJ (MSMg01no067_g19.g1)
ACCAG292162AG292163
length696692
length of high quality
(start - end)
279 (43 - 321)238 (128 - 365)
definitionCHROMAT_FILE: MSMg01no067_g19.b1 PHD_FILE: MSMg01no067_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:31 2005CHROMAT_FILE: MSMg01no067_g19.g1 PHD_FILE: MSMg01no067_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCCAAAAGTGTTTCACAGCAATACAGATTTTTCAAAAAGTGTACCACT
GGGACAGGTGAGTTGGTTTAGTGCCTGCCACCAAGTCTGATGGATGACCT
GATGTTCATTCTTGGGTTCCACCTGGTTGAAGGAAGGTCTGAACTGTCTC
CCTGTAAGCTGTTCTCTGACCTGTACTCATGTGCTGTGGCCCAGGCAGTC
CTACACATCCATATACATGACACAGACACATAGACCCACACAAAATAAAC
CAAAATGTTGGGAAATCATTCTATTGTATTTGGCACCTTGTAGGCCATCA
GTCACCTTGTTGTGTTTTTATACCTCCCCCCACATTTTGGCTGCAAAATA
CAGTCATAATAGATCGAGGAGGAGGATTTTCACTACCTGAGATGAAGTCT
GGGGTGCTTGTTACTGGAGTTGGAGCAACCAGATCAATGCAGTTAGAGAT
GTCATTGTTTTTTCCTCTCTTCATGGCTTTAAAAGATAAGTTTATGCCCC
GCAATACTTTAATATTCAGGGGAGGAAAGGGCATGATCAATGCCTCCTTA
AAATAACACTTCTCTCGCCAGGGGAAACTGGCACGGGAATCCCTTTACAA
GGGCAGCCGGCACTGACCTAAGAGATGACCTCTTTTATCGTATTAA
TACGATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATCGAGCAAGGAAAAGTAGTGGGA
GTTTAATTGGACACTAACCATTACCACCAAGTTGAGATGTGTGAAACAGT
ATATTGCTAATTCTTTTTAGTTACATTGTTGCCCTATTTAGATTAGCTAA
TGCTTATCTCCGTGTTGAGAAGTGTCCATTTGACTTGCCTAGAGAAAGGG
GGTGCCTAGGCAGGCCCATGCTAAGGCATCCCTTCCCCCTGACAGACCAG
CCACACGATGGCATAGTATAGAATAGTTTATTTGGGGCATGGGGAGGGGA
GTTAAGAGAGTATTTTATTCACACAACGCCCCACAGAAAAAGAGTAGGGA
AGTGGAGTCTGGCAATGACCACATGGAGAGAGGGGGAAAGGGAAGGGGAG
TAAGGGGTCAAGAGGCAAGGGAGCAAGATAGTAATATAGAAAGGAGGGAA
CTATCAGCCCATTTTATAGGGCCAGGCCTACCTTGCATCAGTCAGGTAAC
TGTGGGGGTAGAGTCCAGACCTAATACTACCAGCCAGGGTTGCTAAGAAA
CCTTGTCTCTAAAATCAAACAAGGCAAAACTAACTAAAAAAATAATTCCC
CCATTTCCTTCTTCTCTATTAAATTTTCTATACTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g19.g1 MSMg01no067_g19.g1 CHROMAT_FILE:
MSMg01no067_g19.g1 PHD_FILE: MSMg01no067_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:31 2005
         (238 letters)



>mm_chr9_73215051_73215688
          Length = 638

 Score =  404 bits (209), Expect = e-117
 Identities = 224/229 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagttgagatgtgtgaaacagtatattgctaattctttttagttacattgttgccctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caagttgagatgtgtgaaacagtatattgctaattctttttagttacattgttgccctat 253

                                                                       
Query: 61  ttagattagctaatgcttatctccgtgttgagaagtgtccatttgacttgcctagagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttagattagctaatgcttatctccgtgttgagaagtgtccatttgacttgcctagagaaa 193

                                                                       
Query: 121 gggggtgcctaggcaggcccatgctaaggcatcccttccccctgacagaccagccacacg 180
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| 
Sbjct: 192 gggggtgcctaggcaggcccatgctaaggcataccttccccccgacagaccagccacaca 133

                                                            
Query: 181 atggcatagtatagaatagtttatttggggcatggggaggggagttaag 229
           |||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 132 atggcatagtatagaatagtttattccgggcatggggaggggagttaag 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)