BAC Information

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BAC

Clone NameMSMg01-067L02
Chromosome9 (Build37)
Map Location 68,224,143 - 68,224,245
singlet/doubletsinglet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L02.T7 (MSMg01no067_l02.b1)MSMg01-067L02.TJ (MSMg01no067_l02.g1)
ACCAG292367AG292368
length745705
length of high quality
(start - end)
---103 (104 - 206)
definitionCHROMAT_FILE: MSMg01no067_l02.b1 PHD_FILE: MSMg01no067_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:52 2005CHROMAT_FILE: MSMg01no067_l02.g1 PHD_FILE: MSMg01no067_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
TAAGCTTAATTTCCTGGTCCATAAGCTGTAAAGAGTGGTTCCTTTCAGCG
TGGGTTTCATGTACAGACTCTCAGGAGGGCTGACTCATAAATAAACTACT
CCTTTGTCGATTTACGTCCCTATCTTTGGGAACGCACGGCTGCCTTAGAT
ATCAACAAAGAAAAGAAATTCAATCTTGCATTAGCATCTTCTCTCTCTGT
CTCTCTGTCTTACCGTCTGCCTGTTTTTTTTGAATATTTTACCCACTCTT
CTGCACCACTAGAGATTTTTTATAACTCTTACCAGTCAAGATCCCTTAGT
GCGCCGACATTGTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCAGA
ATATTTGTTATTCTTCTTATTGTTTGTTTTCCCCATCCTATATAAAAAAA
GAAAACATTTCTCTTTCTCGATGCCCCCCTATTGATTCATTTATCCTTTA
TTCGCTTCCTACCTCATACCTACTTTGTCCTCTTTGTTTACCTTATATTA
TAACTACATTTTTACTTACACCCTATTTTTTATTATCGGCTTATTATTTA
TCTAACTATTTCCCGCTCCTTCTTTATACCCTTCTCGTTACTTCATTTCC
TCTCTATTTTTTTTCTCTTTCTCTCACCTTTCCTATATTTCCATCTCTGT
TCAACATCCCCTCCTTTTTTCCTCCCTCTCTTCTATCTTTCACTG
AACAATGTAATGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATATAATTGTGCAATGACAGAGTG
CAGACAGTTCTGTGTCTAGGCAATGACACAGCACCAGAAGCTGCCAGAAA
CTCAGTGGATTTCAGCATTTGCCGTTTATCTGCTACCCAGGTTACATATC
TGTAACAGTTTGGTCATAACTCTCACTGTCTTCCCAAGAGGTCCAGGTGT
ACAGAGGCTTCCCTCAGACAGGAAGTATGTTTAGGTCTCATACCCAAGCA
AATACAGGGACCTAAAACTTTATCATTGCCCAGACTCATGTGCTCATGTT
GTGGACTCCTGTTTTTTTTTGCCCCCCCCCCCCCCCTCCTGTACCTGTAC
CCTTGAATCTTCTAGGTTCTTACACCAAAAAAAAAAAAAAAAAATTTTGG
TGGGGTGTGTTCAGATTTTTGTTTTTTGTGTTTTGCCTTGTTTTTGTTTT
TTTTCCTATTTGTGTTTGTTTAGATGATGTTCCGCGGTATGGTTCACACT
GCCTTCTCTTTTGTATCTGCCAATATTCCCCTTTCTCCATGCCTGTCTTA
TTCATTCATTTCTCCACCGTCATATCTTCTCTTCAACGCATCTTCGAATA
CCTCTGTATATCTTTTATTATATTTTTTTATTTCCTTTACTTCCTTCCGA
CTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l02.g1 MSMg01no067_l02.g1 CHROMAT_FILE:
MSMg01no067_l02.g1 PHD_FILE: MSMg01no067_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:52 2005
         (103 letters)



>mm_chr9_68223943_68224445
          Length = 503

 Score =  192 bits (99), Expect = 7e-54
 Identities = 102/103 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagttctgtgtctaggcaatgacacagcaccagaagctgccagaaactcagtggatttc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acagttctgtatctaggcaatgacacagcaccagaagctgccagaaactcagtggatttc 244

                                                      
Query: 61  agcatttgccgtttatctgctacccaggttacatatctgtaac 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agcatttgccgtttatctgctacccaggttacatatctgtaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)