BAC Information

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BAC

Clone NameMSMg01-069L20
Chromosome9 (Build37)
Map Location 30,410,508 - 30,410,752
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L20.T7 (MSMg01no069_l20.b1)MSMg01-069L20.TJ (MSMg01no069_l20.g1)
ACCAG293926AG293927
length678846
length of high quality
(start - end)
245 (45 - 289)88 (133 - 220)
definitionCHROMAT_FILE: MSMg01no069_l20.b1 PHD_FILE: MSMg01no069_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:34 2005CHROMAT_FILE: MSMg01no069_l20.g1 PHD_FILE: MSMg01no069_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAATTTCAAAAAATCCGCGGAATTCCACTTTATACCAAAAAAGATTTTC
TGTGATGATGTCCAAGACCCTAGTTGAAAGCTTATGAGTTTCTGCTCACA
CAAATACAGCAAATATCTGTGAAAATAATTCTGTTTCCACGTCTCTACAT
CCATTTTTTTGATGTACTGTGATTCTAAACACCCCCTGATTTCTCCCTTC
ACGTGAAATGCTAATTTCCTTTATTTATGCCTCATTTTCTCAGCTAAGGA
AGAGGGACACTTAAAGAACCTCCCCAAACTAATGGCTTGATAATTGTAAT
ATTTTTTTTCTTCAGGAACTGGAATGGGTTATATACTCACCATAGCACCT
GCCTCTGCCCAACTTGTGCTGAAAATTCACAAGACTGACCAACCTGAAGA
GAGGAACCATCTCAAGGCCCCTCTATCACCTGCTTGTGGCTGGACTCAGG
TTCAAACAGTTGAGTGCTCTGAGGGAAGACCTTTCAGGCATTCTTCTCAT
TGTCTGCTTGCCTCCTATAACATCTTCCCTGTATGGATGACTTTATAGTA
ATTGAATTCCTTCCATTTTCCTTGTGATTTCATGCCTAACACTTATAGAT
TCCATACCCACTCACAGGCACTTATTTTTACCGATATCACCCCTATACCT
ATAGTATTATCCCTCATCCTCCCCCCCC
TTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTCTCCTTTTTTCTCCAATC
CTNTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAACTCAACCAGAGC
AGCCCTAAGAATTTGGGATCTTGGTTCAAGATGAAAAGAGGAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAT
ATTGATAGAAGGTGAAGGACAATGAGAAGGAGAAGGAGAAGGAGAAGGTG
AAGGAGAAGGAGAATGAGAATGCCGTATCTTTTTTTCGCCTTGTTCCTTC
CCCTTATCCCCTCTTTTACGCTACCTTATTTTTCTTTTTTCGCATATTAA
TTCCCTTGGCCCGGCCTCCGCTCCTTTTTTCTCTCCCCCCCTCCCCCCCC
CCCTTTCCTTCCCGCCCCCCTTTCTTTTCGGCTGTTTCCCCCCCCCTCCC
ACTTTTCATTTCCGCTTCTTTCCTGTGCTCCCCCCCTCTTCTTGTTTTTT
TTTGCGTTGTTTTTTTCTCCCCTCTCCCCCCTATTTCTCCCCTCCCCTGG
CTTTTACGCGTACACGGCTTTTTTTTTCCGCCGTTTGCTCCCTTTTTTTT
TTTCCCCTTACCGCTCCCCCTTTCCCACCTTTTCTTTGTACTTTCTTTTC
GCCGCTTTTTTCCCGCCTTTTTTTGCCCCCTTCGTGCCGCTTTTTTTTTG
CTTTCGTGTTTCGCGCGTTTTTTTTTTTTCTCGCGTTGCTGTTGCTATGA
TGACACTCCTTTATTGTTTTTTATGTTTTGTTTGCCCCCGCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l20.b1 MSMg01no069_l20.b1 CHROMAT_FILE:
MSMg01no069_l20.b1 PHD_FILE: MSMg01no069_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:34 2005
         (245 letters)



>mm_chr9_30410308_30410952
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttctgtgatgatgtccaagaccctagttgaaagcttatgagtttctgctcacacaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attttctgtgatgatgtccaagaccctagttgaaagcttatgagtttctgttcacacaaa 260

                                                                       
Query: 61  tacagcaaatatctgtgaaaataattctgtttccacgtctctacatccatttttttgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagcaaatatctgtgaaaataattctgtttccacgtctctacatccatttttttgatg 320

                                                                       
Query: 121 tactgtgattctaaacaccccctgatttctcccttcacgtgaaatgctaatttcctttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tactgtgattctaaacaccccctgatttctcccttcacgtgaaatgctaacttcctttat 380

                                                                       
Query: 181 ttatgcctcattttctcagctaaggaagagggacacttaaagaacctccccaaactaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgcctcattttctcagctaaggaagagggacacttaaagaacctccccaaactaatg 440

                
Query: 241 gcttg 245
           |||||
Sbjct: 441 gcttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)