BAC Information

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BAC

Clone NameMSMg01-070B10
Chromosome9 (Build37)
Map Location 60,275,891 - 60,276,280
singlet/doubletsinglet
Overlap geneThsd4
Upstream geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B10.T7 (MSMg01no070_b10.b1)MSMg01-070B10.TJ (MSMg01no070_b10.g1)
ACCAG294193AG294194
length725694
length of high quality
(start - end)
215 (44 - 258)389 (69 - 457)
definitionCHROMAT_FILE: MSMg01no070_b10.b1 PHD_FILE: MSMg01no070_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005CHROMAT_FILE: MSMg01no070_b10.g1 PHD_FILE: MSMg01no070_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATT
CAAGATGGTCACGAGCTCATAGACATAGTCATACAATGTGCCAACCACAC
TTAGTGACCTGTGATCTCTCACTTAGTGACCTGTGATATCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTGTGCCTGTTTG
TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTGTGTGTCTGCGTGTTTGAAATAGAGTTTCAACATGTAACCC
AAACTACTCTTGTAATCAAAGCCATACTATTTCAAAATCTCAAATTATGA
GAACACGATATGAAGAATCCTTCTCACTATGAAAAGCATTCTATCAGACC
ATATTCATCATTGTTGATAACATTTTTAAATTCTACATATAATTATTGAT
GAATTGATTCCATCATCATGTACCGTATTTATCATATTCATATTATAAAT
TGTACCACTTATTTTACTATATATATTGTTATTTGTTGTAGATGTACCAT
GTATTATAGTATGTATTGTATTTGACTTATTAAAACTAATATTATTATTA
TTTATAATAAATACAAATAATAAAAATTATTATAATGTAAATATAGTAGT
ATAAATCAATAATTGATAAAAAATTCTACAACTACTATAATAATAAAACT
TCACTAATAAATATATATAAACAAA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCCATTCTGCAGAATCAGGTAGTGGCTCTG
CTGTTGTCCAGGCAGGAACAGACACAGGGACCAAGATGTGCACATACCTT
CTCTCTGAGGGTTCACGGTCCCGGGCCTGTGGATGTCGGCTGCCTCGCAC
CACTGCAGGGCCTTGGCGGCTAGCATTGGAGCCAGCCAGGGCTCTTTGGT
CCTCCTGGCTTCGATGCAGTGGTACTGAGGTCCGTACGGCTGACACAACG
TGGCCAGTGATGGACAGTGCACGGCCATTGGGCCGGGAGCCTCCTCGAGC
ACGGTAGGAGCTGGGCAGGCAGGGCCGTGTCTGCTCCATCACACCACCAC
TGCAGCTGCGCGAACAGGCAGACCAGGGGCCCCAGGAGCCCCACACACCT
GGGGAGCCACCGCCACTGTCCTCTGGGGTTCTCTCAGTCATTGCCATCCG
TTGTGGGACCTATAGAAACAGAGGCTGGTTAGAGTCTTGAACCTTATAGG
CTTGGGAAAGAACTCCTTTCCCTACTGGACCCATGTGGACCCAGGGTACA
TTTAATAAGCACAGAATTCCGCCTGGGTCTCAGTTTATATGGACCCCCTC
TTGTAAGACCCATTTAAGTGTACCATCAGATTCATAGTGCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b10.g1 MSMg01no070_b10.g1 CHROMAT_FILE:
MSMg01no070_b10.g1 PHD_FILE: MSMg01no070_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:02 2005
         (389 letters)



>mm_chr9_60275691_60276480
          Length = 790

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%), Gaps = 1/390 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccattctgcagaatca-ggtagtggctctgctgttgtccaggcaggaacagacacag 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcccattctgcagaatcaaggtagtggctctgctgttgtccaggcagggacagacacag 260

                                                                       
Query: 60  ggaccaagatgtgcacataccttctctctgagggttcacggtcccgggcctgtggatgtc 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggaccaagatgtgcacataccttctctctgagggttcacggccccgggcctgtggatgtc 320

                                                                       
Query: 120 ggctgcctcgcaccactgcagggccttggcggctagcattggagccagccagggctcttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgcctcgcaccactgcagggccttggcggctagcattggagccagccagggctcttt 380

                                                                       
Query: 180 ggtcctcctggcttcgatgcagtggtactgaggtccgtacggctgacacaacgtggccag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcctcctggcttcgatgcagtggtactgaggtccgtacggctgacacaacgtggccag 440

                                                                       
Query: 240 tgatggacagtgcacggccattgggccgggagcctcctcgagcacggtaggagctgggca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggacagtgcacggccattgggccgggagcctcctcgagcacggtaggagctgggca 500

                                                                       
Query: 300 ggcagggccgtgtctgctccatcacaccaccactgcagctgcgcgaacaggcagaccagg 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ggcagggccgtgtctgctccatcacaccaccactgcagctgcgagaacaggcagaccagg 560

                                         
Query: 360 ggccccaggagccccacacacctggggagc 389
           ||||||||||||||||||||||||||||||
Sbjct: 561 ggccccaggagccccacacacctggggagc 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 790
Length adjustment: 9
Effective length of query: 380
Effective length of database: 781
Effective search space:   296780
Effective search space used:   296780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)