BAC Information

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BAC

Clone NameMSMg01-070L12
Chromosome9 (Build37)
Map Location 70,819,380 - 70,978,920
singlet/doubletdoublet
Overlap geneLOC100041628, Aqp9
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
Downstream gene1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L12.T7 (MSMg01no070_l12.b1)MSMg01-070L12.TJ (MSMg01no070_l12.g1)
ACCAG294673AG294674
length694689
length of high quality
(start - end)
231 (66 - 296)342 (61 - 402)
definitionCHROMAT_FILE: MSMg01no070_l12.b1 PHD_FILE: MSMg01no070_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:53 2005CHROMAT_FILE: MSMg01no070_l12.g1 PHD_FILE: MSMg01no070_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,819,380 - 70,819,610)(70,978,579 - 70,978,920)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAATTCTG
AAGGTTGCCTTACACAGAGGAACAATGTTCAGACATTTGAAGATTTGTGT
ATGTAATACATACAAATGCTGGAGCCCATGACAACAACAGGGAAACACAG
ATCTAAAAGTATAATGTTATTATTTTGTGTTCTGTTGTCTTAGGTTTACA
GGCAAAACAAACCTCTTAAAATCTAACAAGCCGATCATGCATGATGGGCA
CAGGCAATGAATTGTTGCAAACAGAGTAATTCCTCTGGAGTCTTAGAGGG
ACGGCATATTTAGCACGCTGGGACTGGAAGAAGTCTAGATTTATGATATA
TTAGGTTTTCTCTTTCTTTACAGTGCCTTCCTGGGCCAGAAATTGAGTTC
AATTATATCTCACAAATATTTATTCAGACTTGAGTAGGCAGAGTCCTGTC
AACCAAGGATGTGGTCTTTGCTCTTGCCAGACAGCTTTGTCTTACCCCGA
GTTCAAGGACGGCTTTAATCTTTCTCTTATTCTAGGAGTCAGTTTGAATA
ATCTTCAGCTCATGAAGCCCTTTATTACGTATATTCTTATACCATCTGCT
GAGCAGTGTCTGGAGAGACCGTAGCCAGCCTTGATAAAGGAGCCTGTGAC
ATCCCACCTACTAAAGCTTCCATGCTTCTCTTTTTCTTCTAACT
GCAGTGATAGCCTGGCGGCGCCTGGCTCCAAATTAAGGTGAACTATAGAA
GTATCCCCGGAATTCCATACAAGTTGAGATGAAAGCACCGGGCCAACCAT
GGGCTTTCTGCTTCTACTTCATCATCCTGGGGTCCTCCTGGGGGGCTCTC
TGAGGCTATCTCACCATAAGGATTGCTTGGCTTTTATTGATTTGCTCAAG
ACCAAGCATGGGTCTCTGTTCCCCTTTGATTTCTGCTGCTGTGATAGAGG
AGAGTGCACAGCCCCTCACCCTATTCAAAGTCAAAGCAGGAGCTCAAAGC
AAGAACTTGATACAGAAAATATGGAGGGACAGTGCTTGCTGGCTTGCTCA
CAGGCTCATCTATAGAAATTTTTCTTATACAGTCTAGAATGAACACCTGG
AAGAATGGCACCACTCTCCAGTGGTATGGACCCTCCCCCATCAATTAATA
AGCAAGACAATTCCCTCACAGATATGTCCACAGGCCAGTTTGATCTGGTG
GTCTCCCAGTTGAGATTCCCCTCCCAGGTTTACCCTACCTAGGTGATGCC
ATGTTGGCAGTTAAAGCTGACTCAGACACCATCCTTCAGCCCTTTCCAGA
AAACACTAATGGCCCCGAACTCTGTCTTCTATAGACGGATTCATGTTCTT
TGCTGATGAAAAGCTGCTTCTCACGGTTAGAAAATGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l12.b1 MSMg01no070_l12.b1 CHROMAT_FILE:
MSMg01no070_l12.b1 PHD_FILE: MSMg01no070_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:53 2005
         (231 letters)



>mm_chr9_70819180_70819810
          Length = 631

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggaacaatgttcagacatttgaagatttgtgtatgtaatacatacaaatgctggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggaacaatgttcagacatttgaagatttgtgtatgtaatacatacaaatgctggagc 260

                                                                       
Query: 61  ccatgacaacaacagggaaacacagatctaaaagtataatgttattattttgtgttctgt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ccatgacaacaacagggaaacacagatctaaaagtagaatgttattattttgtgttctgt 320

                                                                       
Query: 121 tgtcttaggtttacaggcaaaacaaacctcttaaaatctaacaagccgatcatgcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttaggtttacaggcaaaacaaacctcttaaaatctaacaagccgatcatgcatgat 380

                                                              
Query: 181 gggcacaggcaatgaattgttgcaaacagagtaattcctctggagtcttag 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcacaggcaatgaattgttgcaaacagagtaattcctctggagtcttag 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_l12.g1 MSMg01no070_l12.g1 CHROMAT_FILE:
MSMg01no070_l12.g1 PHD_FILE: MSMg01no070_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:53 2005
         (342 letters)



>mm_chr9_70978525_70979266
          Length = 742

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccatacaagttgagatgaaagcaccgggccaaccatgggctttctgcttctacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aattccatacaagttgagatgaaagcaccgggccaaccatgggctttctgcttctacttc 337

                                                                       
Query: 61  atcatcctggggtcctcctggggggctctctgaggctatctcaccataaggattgcttgg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 336 atcatcctggggtcgtcctggggggctctctgaggctatctcaccataaagattgcttgg 277

                                                                       
Query: 121 cttttattgatttgctcaagaccaagcatgggtctctgttcccctttgatttctgctgct 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttctattgatttgctcaagaccaagcatgggtctctgttcccctttgatttctgctgct 217

                                                                       
Query: 181 gtgatagaggagagtgcacagcccctcaccctattcaaagtcaaagcaggagctcaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtgatagaggagagtgcacagcccctcaccctattcaaagtcaaagcaggagctcaaagc 157

                                                                       
Query: 241 aagaacttgatacagaaaatatggagggacagtgcttgctggcttgctcacaggctcatc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagaacttgaaacagaaaatatggagggacagtgcttgctggcttgctcacaggctcatc 97

                                                     
Query: 301 tatagaaatttttcttatacagtctagaatgaacacctggaa 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tatagaaatttttcttatacagtctagaatgaacacctggaa 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)