Query= MSMg01no070_l19.b1 MSMg01no070_l19.b1 CHROMAT_FILE:
MSMg01no070_l19.b1 PHD_FILE: MSMg01no070_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:54 2005
(579 letters)
>mm_chr9_64045683_64046661
Length = 979
Score = 1017 bits (526), Expect = 0.0
Identities = 541/548 (98%), Gaps = 5/548 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaatcccaaaccactcttaggttgccctgctgttatgacagcgacaatgctgt 63
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 ggaattcaaatcccaaactactcttaggttgccctgctgttatgacagtgacaatgctgt 484
Query: 64 ggtcttctgctccctgttcccagtaccctcccactgctactgggaggagcaaagggagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggtcttctgctccctgttcccagtaccctcccactgctactgggaggagcaaagggagag 424
Query: 124 tgttcaaaagatctgggccttcagctttggcttgcccaaactcctagcctgccccagctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgttcaaaagatctgggccttcagctttggcttgcccaaactcctagcctgccccagctg 364
Query: 184 tcctcagctgtcttcagctgtcctcgttacatccattctttctcaggaagtggaacctgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcctcagctgtcttcagctgtcctcgttacatccattctttctcaggaagtggaacctgg 304
Query: 244 tgggaaactagaacctttcatcagcagtctagggaaagtttaggtgggaaaaaattacat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgggaaactagaacctttcatcagcagtctagggaaagtttaggtgggaaaaaattacat 244
Query: 304 ttacaagtaatggctagttgaaggctttggagttcttggagttttgttttgtttttgttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttacaagtaatggctagttgaaggctttggagttcttggagttttgttttgtttttgttt 184
Query: 364 tgttttgcttctctcttttaaatctctgctgctcagttctctgaggtcctgggtagccag 423
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgtttt--tt---tcttttaaatctctgctgctcagttctctgaggtcctgggtagccag 129
Query: 424 aggtagctccatgaaggctaggagtagactcatttcatttctccatcttaaggagggttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aggtagctccatgaaggctaggagtagactcatttcatttctccatcttaaggagggttc 69
Query: 484 ttaatgctctcctaagcatgctgggaagggggtcaggccatttgaaacgtaaagttgcta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttaatgctctcctaagcatgctgggaagggggtcaggccatttgaaacgtaaagttgcta 9
Query: 544 ttttaaaa 551
||||||||
Sbjct: 8 ttttaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_l19.g1 MSMg01no070_l19.g1 CHROMAT_FILE:
MSMg01no070_l19.g1 PHD_FILE: MSMg01no070_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:54 2005
(551 letters)
>mm_chr9_63945691_63946642
Length = 952
Score = 1013 bits (524), Expect = 0.0
Identities = 545/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 1 tcctttt-aacagtacagcaaacacactgttacagtgcccaggaacttcatggctgtaag 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttttaaacagtacagcaaacacactgttacagtgcccaggaacttcatggctgtaag 260
Query: 60 atcaggcttcttacatatgtagctctatcagactaagggtgagaagatctgtcaactgac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaggcttcttacatatgtagctctatcagactaagggtgagaagatctgtcaactgac 320
Query: 120 tcaagaacggtgcaggggagaagacaggggcacaaagtgctaatacattgatttcatggc 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagaacggtgcaggggagaagacagaggcacaaagtgctaatacattgatttcatggc 380
Query: 180 ttacaaaatcacagagccatgtaaaatcccagcatgtcgccctcctgtctccctcaagcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttacaaaatcacagagccatgtaaaatcccagcatgtcgccctcctgtctccctcaggcc 440
Query: 240 ccagggcttccctgacgctttgaatccaggccttacgagtggcctggaccttccacgaga 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 441 ccagggcttccctgacgctttgaatccaggccttacgtgtggcctggaccttccacaaga 500
Query: 300 gcttggggacctctgtccccaagctttaggctgatgttctgctgaccctggccttgatgg 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gcttggggacctctgtccccaagctttaggctgatgttctgctgggcctggccttgatgg 560
Query: 360 cccttgcagggtttgtatactgagaggagtgtatgcctgcagctccgtctgctgaccaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttgcagggtttgtatactgagaggagtgtatgcctgcagctccgtctgctgaccaga 620
Query: 420 ccacagctctgcagtccagggttcctacctaagatgggagttgtccaagttgggtttttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacagctctgcagtccagggttcctacctaagatgggagttgtccaagttgggtttttg 680
Query: 480 ttgctatgattaaacactgaccaaaaccaatttaagggaggaaagaatttatttggctta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctatgattaaacactgaccaaaaccaatttaagggaggaaagaatttatttggctta 740
Query: 540 taggatactatc 551
||||||||||||
Sbjct: 741 taggatactatc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
