XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGGATATATATCAAACCAAGTAACATTCTGCAGGGCAATATACACAA
ACCCGAGGGCCTCTTCCCTGCAGGACTGTGGAAGGAAATGGAAATCAACC
AAATGAGGACAGCAAAAGCAGCCTGCATGGACAAAGGCGTAGCCGCAGTC
ACTTACAGATTGGAGCATGCTCAGGACGGGAGAAAGGGGGGAGGAAAGAG
AGCTGTCTGAATCTGGCACAGAGACGCTGTGGGTGGTTCATTAGGAAGAG
AGGCACTCCCTCTGATTGGTTAGCAGCGTGCATTTGGCTTTCTCTGATTG
GATGCACTTAGGGACCTGTCAGTGACTGATCTTTGGGGTCAGTGGTCATG
GGCTGTTGTTTGGCCACCCAGACCGTTACTCCAAACAGCAGTCTGGTTTA
CTAGAAATCAACTTGACTGCGAGNCTGAAATAGGCTGGCTTCCAGGGCTG
GACACTCTAGATAATGGGCTGGTTTCCTGAGCAGAGCTCTGCAAGCCTGG
GTTTTGATATAAGGCCTGGTAGACATTCATTTGCATATCCCATCTGCCAG
TGGAGAAGTGTTTTTAGCATTTAACAAGAGGCATCTGGGTCTGCGTTCCC
TTCAAATATGCGGCTTGCCAAGTACTTTGCCCAAGGGAGAATATAGTACT
TTCT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGCTTACAGGATTATATTTTCCAAAGTAG
CATACTGATGGGTCTTGGTGGGTGGGCATTAAGAAGCACCTGGAATGGAG
GGTCTTCCGTTTGGTTGCGGTTCCACCCTAATTAGCTCGGGAACATTCTC
TGTGCCCCCCTTTGCCTTTCTCTTTATATCCCACAACCCAGCAGTGAACA
AAGCTCGGAGTTCCTGCTGATGTTGTGTTTGATGAATGAATAAACGCACT
TAAGCTGGTAACATCTCTTGCTTCTCAACATTTTAATAAGGGGGAAAAAT
AGTAAAGCATTTTGACCAGGAAGCTGCTTCATCTATCAGAATATTGATAT
ACCAAGTTCCTGGACCCGCATTAAGATAAATGCATAGTACTTTTGCTTGA
AATACTTACAGAAAAGCAATTAACTTATGGGTGCCGTGATGCCCCGGCAA
TGCTATTCACGTCAATCCTTTCTGGAAGATGAAGATGAGCACTTCATTTT
AATTCTGCGGAGAGCTGAAATCCCGAGGACAGCTTTATAAATTGATCTCC
CTTTAAGCTTTTTAGATCCTTGCTTCCCCAAGTAGGGACCCAGGGGTCAG
CAGCATTGGTGCTGGTGACACCTGGGACCGTATTAGAATTGCAGTTCAGA
C

Query= MSMg01no071_b21.b1 MSMg01no071_b21.b1 CHROMAT_FILE:
MSMg01no071_b21.b1 PHD_FILE: MSMg01no071_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:25 2005
         (372 letters)



>mm_chr9_115617262_115618033
          Length = 772

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcttaggatatatatcaaaccaagtaacattctgcagggcaatatacacaaacccg 61
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 202 gaattcttaggatatatataaaaccaagtaacattctgcagggaaatatacacaaacccg 261

                                                                       
Query: 62  agggcctcttccctgcaggactgtggaaggaaatggaaatcaaccaaatgaggacagcaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agggcctcttccctgcaggactgtggaaggaaatggaaatcaaccaaatgaggacagcaa 321

                                                                       
Query: 122 aagcagcctgcatggacaaaggcgtagccgcagtcacttacagattggagcatgctcagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagcagcctgcatggacaaaggcgtagccgcagtcacttacagattggagcatgctcagg 381

                                                                       
Query: 182 acgggagaaaggggggaggaaagagagctgtctgaatctggcacagagacgctgtgggtg 241
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 acgggagaaaggggggaggaaagagagctgtctaaatctggcacagagacgctgtgggtg 441

                                                                       
Query: 242 gttcattaggaagagaggcactccctctgattggttagcagcgtgcatttggctttctct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttcattaggaagagaggcactccctctgattggttagcagcgtgcatttggctttctct 501

                                                                       
Query: 302 gattggatgcacttagggacctgtcagtgactgatctttggggtcagtggtcatgggctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gattggatgcacttagggacctgtcagtgactgatctttggggtcagtggtcatgggctg 561

                   
Query: 362 ttgtttgg 369
           ||||||||
Sbjct: 562 ttgtttgg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no071_b21.g1 MSMg01no071_b21.g1 CHROMAT_FILE:
MSMg01no071_b21.g1 PHD_FILE: MSMg01no071_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:25 2005
         (459 letters)



>mm_chr9_115770907_115771765
          Length = 859

 Score =  849 bits (439), Expect = 0.0
 Identities = 454/459 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttacaggattatattttccaaagtagcatactgatgggtcttggtgggtgggcatt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 aggcttacaggattatattttccaaagtagcatcctgatgggtcttggtgggtgggcatt 600

                                                                       
Query: 61  aagaagcacctggaatggagggtcttccgtttggttgcggttccaccctaattagctcgg 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagaagtacctggaatggagggtcttccgtttggttgcggttccaccctaattagctcgg 540

                                                                       
Query: 121 gaacattctctgtgcccccctttgcctttctctttatatcccacaacccagcagtgaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaacattctctgtgcccccctttgcctttctctttatatcccacaacccagcagtgaaca 480

                                                                       
Query: 181 aagctcggagttcctgctgatgttgtgtttgatgaatgaataaacgcacttaagctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagctcggagttcctgctgatgttgtgtttgatgaatgaataaacgcacttaagctggta 420

                                                                       
Query: 241 acatctcttgcttctcaacattttaataagggggaaaaatagtaaagcattttgaccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acatctcttgcttctcaacattttaataagggggaaaaatagtaaagcattttgaccagg 360

                                                                       
Query: 301 aagctgcttcatctatcagaatattgatataccaagttcctggacccgcattaagataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 359 aagctgcttcatctatcagaatattgatataccaagttcctggatttgcattaagataaa 300

                                                                       
Query: 361 tgcatagtacttttgcttgaaatacttacagaaaagcaattaacttatgggtgccgtgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgcatagtacttttgcttgaaatacttacagaaaagcaattaacttatgggtgccgtgat 240

                                                  
Query: 421 gccccggcaatgctattcacgtcaatcctttctggaaga 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gccccggcaatgctattcacgtcaatcctttctggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)