BAC Information

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BAC

Clone NameMSMg01-071O05
Chromosome9 (Build37)
Map Location 79,021,477 - 79,118,776
singlet/doubletdoublet
Overlap genenone
Upstream geneC920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071O05.T7 (MSMg01no071_o05.b1)MSMg01-071O05.TJ (MSMg01no071_o05.g1)
ACCAG295564AG295565
length725748
length of high quality
(start - end)
256 (46 - 301)120 (71 - 190)
definitionCHROMAT_FILE: MSMg01no071_o05.b1 PHD_FILE: MSMg01no071_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:26 2005CHROMAT_FILE: MSMg01no071_o05.g1 PHD_FILE: MSMg01no071_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,118,525 - 79,118,776)(79,021,477 - 79,021,596)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGA
ATTCAGGTTAGAATTTCTTTCCTTTTGGCAATTTCTGTTATACTATGAGC
CTTTCTTTTGCTGAATTAAGCTTAGGTTATGGGATAAAAAAGTTTCTATT
ATGGCTATTACAGAGTTTAAGGAGTGTTGGTGGCTGTCTGCCTATATCAA
GCTGTAGACGTTTTTATAGCAACTATAAATATTAGGTTCTTTTAGTGCCT
ACAAATAAAATCCAGGATGTCCTCTCACTATATTTCCCTGTTCTTACTAA
TATTTTGCCTGCTTTTTTTCTTATGCTTATCATGGCAACTGACAGGCTCT
ATCTTTAGCCTTGTCTAACTTTCCCTCCATTATCTCTTACCTTATTTTCC
ATAGATGAGACGTCTTTTATATCTACTAAGGCCTGATCTCATTCCTTGTT
CACTAGGCCCTGTATTTCTGATTTCTACTGGTTATTTCTCCTTGGTAATT
TGACGTTTTCTTTAAGATTGAATTTTACTTAGACTCTGTCCTGTTCAGTC
CTTATTTGTTTTTAACCAGTCTAGACTTTCCCTTGCATCTCCTTTGCCAT
ACCTGACCACTATCTTTATTATAAACACCCTCACCCTTGTTGTACCTTTA
TACTCCTAATTTATCTTTTGATTTTTTTTAACTGATAACAAGCACTTAAC
ATATTCTCCTAAATTTACTCCTCCT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAATGTGATTTTGCTTCCCACAGCTGGAT
TTACTACAAGTTGAGATGCACTGCAGTACACGGTAAGGGAATATCTACAG
TCTTGGCAGAGGTACGACGATCAGAAGAGGTTCACAGAGAAGAGATCACG
TGTAATTAAGACATTATAAAAGTATGTAATATTCAATATTAATAATTATT
AATAATATAATATTAACAACATTTAATATTTTACGGAAAATCAAGAAAGT
AAGCTTCAGCATGAACATGTTGTAATTAAAAAATTTACGATTTGTTTATG
CAGACTACTTAAACTTTTGCTTACCGTCGTTTGTGATTAACATGGTTTCT
GATCGATGATTTTTATCGAATCTGTATGTAACTCACCATGATAAGTCAGT
TCTATTTGTCTAGGTGTATGAGATAAGGGTCTAAACCCGGGTACGACGGG
TGCAATGAAGTGGTTGGAATCATCGTCGGATACTGTAGATTTGAATGTCT
GGTACCATGACTATGTTAATAACAATATAATATATCGTAGGTCGATTCTT
GAATACAATTCTTTATATCATAAACTATTATACACTAGATTAGATTAATT
TAAGATATAATATAGAATATATTAAATAATACATTCCCTCACATATTTAA
TCACTACATTAATCCTACAAATAATAACTAGACGCCTCTTCCTAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_o05.b1 MSMg01no071_o05.b1 CHROMAT_FILE:
MSMg01no071_o05.b1 PHD_FILE: MSMg01no071_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:26 2005
         (256 letters)



>mm_chr9_79118322_79118977
          Length = 656

 Score =  456 bits (236), Expect = e-133
 Identities = 248/252 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaggttagaatttctttccttttggcaatttctgttatactatgagcctttcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcaggttagaatttctttccttttggcaatttctgttatactatgagcctttcttt 396

                                                                       
Query: 64  tgctgaattaagcttaggttatgggataaaaaagtttctattatggctattacagagttt 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgctgaattaatcttaggttatgggataaaaaagtttctattatggctattacagagttt 336

                                                                       
Query: 124 aaggagtgttggtggctgtctgcctatatcaagctgtagacgtttttatagcaactataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaggagtgttggtggctgtctgcctatatcaagctgtagacgtttttatagcaactataa 276

                                                                       
Query: 184 atattaggttcttttagtgcctacaaataaaatccaggatgtcctctcactatatttccc 243
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atattaggtttttttagtgccaacaaataaaatccaggatgtcctctcactatatttccc 216

                       
Query: 244 tgttcttactaa 255
           ||||||| ||||
Sbjct: 215 tgttctttctaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_o05.g1 MSMg01no071_o05.g1 CHROMAT_FILE:
MSMg01no071_o05.g1 PHD_FILE: MSMg01no071_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:26 2005
         (120 letters)



>mm_chr9_79021277_79021796
          Length = 520

 Score =  170 bits (88), Expect = 2e-47
 Identities = 112/120 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgtgattttgcttcccacagctggatttactacaagttgagatgcactgcagtaca 60
           ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||
Sbjct: 201 aaaatgtgattctgcttcccacagctggatttactacaagtaaagatgcaatgcagtaca 260

                                                                       
Query: 61  cggtaagggaatatctacagtcttggcagaggtacgacgatcagaagaggttcacagaga 120
           ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 261 cggtaagggaatatctacaatcttggcagaggtatgacaatcagaagaggttcacggaga 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)