BAC Information

Click to search

BAC

Clone NameMSMg01-071P23
Chromosome9 (Build37)
Map Location 118,354,531 - 118,354,634
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071P23.T7 (MSMg01no071_p23.b1)MSMg01-071P23.TJ (MSMg01no071_p23.g1)
ACCAG295647AG295648
length689709
length of high quality
(start - end)
31 (75 - 105)104 (88 - 191)
definitionCHROMAT_FILE: MSMg01no071_p23.b1 PHD_FILE: MSMg01no071_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:35 2005CHROMAT_FILE: MSMg01no071_p23.g1 PHD_FILE: MSMg01no071_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACAATTTGCGGCGCTAAACGACTACTATAGGTCCACATCCGCGGATTC
TCCCAGAATTTCCCTTTACAGTCCAATAAGTAAAGAAGAGAGAGAAGCCC
ATGGCCCACAGGAGTCGGCAACCAGCTACAGGAAGAAGCAGGCTGTGGGT
CCACCATGTCCCCGGCATTAACACCACAACCCTGGAACCGTCCGTGGTTC
CACTCCTTCCAGCTCAGACATAGTCCTAGTGTGCCAGGTTGGTAGGAGCC
TGGATAGCAGAATTCTCAGATCTGCTTCTTCCAACGCATAACCAAGACTT
GGGGGCAAAATCGCCTGTTCTTAATCTAAAGCAGATAACGGACCCGGTAG
ACTTCAATGCTCTTCCTAGCCCAAAGTTCTAAATAGCTCTAACAACTGCT
GTGATTCAAACTCTGCCCGCATCCCCTGTTCATTCCTCTAACCAGTATTC
CCATAGGAAAGGTTTTCTCATATCCTGTGATGTGAGCTAAATAGACTATC
GTGCCCGTGTATGTGCCTGACACGCCCTTAATGCCATACTTTATATCGCC
CCTGTCTCCTGTTTTATCAACATTGTGCCTCCCTCGCCCTTTCGTTGTTT
GCGCTTTCACTAGCTTCCTTTCTTCCCCGACAGCTCCAGCCATTTGGCTT
TTCTTGTATTGCCTCTCCCTTTAATTCTATTCCGCTGCT
NCCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTGCCCAATCAAACCATCAGGGCATTTGTCCTGTGT
GCTGCGAGCATATCCACTGGGGTGGGGGCACTCTGGATCGCACCTGCGGC
CTGGCTACTTACTCCGAGTTCTTCACCTCAGCTTCCTGTCAGGCCCATGA
ATTCCTCGGAGAAGACTCAAATTCCTGTACTGGACACCCACACAAAGCCG
TGAAGAGAGGCAAAGAACGCACATTGGTGCTGGGGTGGCAGGTGTCCATG
TTGTTACTCTCCCCACCCCCTTTTTTTTTTTTTTTTTCATCTATTTTTTC
TCTCCTCGCTCACTTTTTTTTCTTTTTTTCCTCCCTTCCTCTCTTTTTCT
TCTAGTTCTTTTTCCCCCCCCTCCTTCCCCCTCTTCTTTTTTTTTTTCCG
CCTCTCTCATCCGTCTTTTCTTTTTTTTTATCTTTTTTCTTTCTCCCTTC
TATTTTTATTATCTCTTTTACCTCCCACCTTTTTATTCCCTTCGATTTTA
TACTCCTCTCTACCTTTTTTTCCCCCTCAATCTTTTTTTTTCGTCTCTAG
CCTTATACTTTTTTTTCTTTGTCCCGCCGCCAATTTCTTCCTCCCTTTTT
TTTTTTATTTTACAATTTCCTCGCTTGTCTTGCTATTTTTTACTTTATTC
TATTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_p23.g1 MSMg01no071_p23.g1 CHROMAT_FILE:
MSMg01no071_p23.g1 PHD_FILE: MSMg01no071_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:35 2005
         (104 letters)



>mm_chr9_118354331_118354834
          Length = 504

 Score =  178 bits (92), Expect = 8e-50
 Identities = 101/104 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtcctgtgtgctgcgagcatatccactggggtgggggcactctggatcgcacctgc 60
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct: 201 atttgtcctgtgtgctgcgagcagatccactggggtgggggtactctggatcgcacctgg 260

                                                       
Query: 61  ggcctggctacttactccgagttcttcacctcagcttcctgtca 104
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcctggctacttactccgagttcttcacctcagcttcctgtca 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)