Query= MSMg01no072_b22.b1 MSMg01no072_b22.b1 CHROMAT_FILE:
MSMg01no072_b22.b1 PHD_FILE: MSMg01no072_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:45 2005
(635 letters)
>mm_chr9_29887653_29888684
Length = 1032
Score = 1158 bits (599), Expect = 0.0
Identities = 625/635 (98%), Gaps = 6/635 (0%)
Strand = Plus / Plus
Query: 1 gaaggtaggtttgagaaagctctgtcaccaccctttgtcatgtggggctatactgaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaaggtaggtttgagaaagctctgtcaccaccctttgtcatgtggggctatactgaaaag 257
Query: 61 atggccagcaataagtaaagcaagcacaagtctctgaagatacaaatctgtgtgtggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atggccagcaataagtaaagcaagcacaagtctctgaagatacaaatctgtgtgtggatc 317
Query: 121 cttcgatctccaaaacagagcaaaaaaactgctgggtagaagtgagaactccacatatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cttcgatctccaaaacagagcaaaaaaactgctgggtagaagtgagaactccacatatat 377
Query: 181 gtatgagcttgaaatttctcctcctcctcttcctcctcctcctcctcc---atagtttga 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 gtatgagcttgaaatttctcctcctcctcttcctcctcctcctcctcctccatagtttga 437
Query: 238 tttttttaagagcaggtcaagaatatgatatttagaggtaatagttttaccttgaacttc 297
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttttt-aagagcaggtcaggaatatgatatttagaggtaatagttttaccttgaacttc 496
Query: 298 ctgggccctccaagtcctgttgtgttaactgcgtagaaattggaaaaaatatctcttttg 357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 ctgggccctccaagtcctgttgtgttaactgtgtagaaattggaaaaaatatctcttttg 556
Query: 358 gaatatccacttgaggattacatctgtaaagacaaaaaagagtggactacagttttgttt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaatatccacttgaggattacatctgtaaagacaaaaaagagtggactacagttttgttt 616
Query: 418 gctgttattttagtaaggaatcctaaataaaaaaagtattattctgaaagttgtcttata 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 617 gctgttattttagtaaggaatcctaaataaaaaa-gtattattctgaaagttgtcatata 675
Query: 478 tgagttttgttaagaaaaaaaactattgtaaaataagacataatttagtcataaaatgca 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgagttttgttaagaaaaaaa-ctattgtaaaataagacataatttagtcataaaatgca 734
Query: 538 atttctatttaatttaaaattgatttggctagagatgacaatgatgataaattacattga 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 735 atttctatttaatttaaaattgatttggctagagatgacaatgatgataaattacattaa 794
Query: 598 tttttaaaaagaatttgtcatgaattagaaaaaaa 632
|||||||||||||||||||||||||||||||||||
Sbjct: 795 tttttaaaaagaatttgtcatgaattagaaaaaaa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1032
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1022
Effective search space: 638750
Effective search space used: 638750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_b22.g1 MSMg01no072_b22.g1 CHROMAT_FILE:
MSMg01no072_b22.g1 PHD_FILE: MSMg01no072_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:45 2005
(551 letters)
>mm_chr9_30009542_30010492
Length = 951
Score = 971 bits (502), Expect = 0.0
Identities = 538/550 (97%), Gaps = 2/550 (0%)
Strand = Plus / Minus
Query: 1 tctggcatttctaatggaatccacagatccgaggatgaggacagtgctgggtagccttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tctggcatttctaatggaatccacagatccgaggatgaggacagtgctgggtagccttgg 690
Query: 61 aaattcagccaggtcttgggaagagcgtccaagaacttgaaagactgccagcttcccttg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 689 aaattcagccaggtcttgggaagagtgtccaagaacttgaaagactgccagcttcccttg 630
Query: 121 cccctgcatcctattgctgcaacctggcacctttctcttactggcaaacacaatgaatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 629 cccctgcatcctattgctgcaacctggcacctttctcttactggcaaacacaatgactgt 570
Query: 181 aaacagctcttacagttcaatgcttaagtgaaatgacaggctcaagtgattctctggtat 240
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 569 aaacagctcttacagttcaatgcttacgtgaaaagacaggctcaagtgattctctggtat 510
Query: 241 tgaacttcagacctgaggaaaaagggatgttgttttagctaattatgggtgtgacaggta 300
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 509 tgaacttcagacctgaggaaaaagggatgttgttttagctgattaagggtgtgacaggta 450
Query: 301 ggtcaatccattgccatcagagggtaggatcccatgataaaacagccatacctggaaaac 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 449 ggtcagtccattgccatcagagggtaggatcccatgataaaacagccatacctggaaacc 390
Query: 361 tacgggagatctaatttatatgcaatctttctgagagctagttctgcctg-tgccatgtg 419
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 389 tacgggagatctaatttatatgcaatctttctgagagctagttctgcctgct-caatgta 331
Query: 420 aacataccttctgctaatagacatctctcatattttatggattacttcacaatgaaagct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aacataccttctgctaatagacatctctcatattttatggattacttcacaatgaaagct 271
Query: 480 tgggtcacatctggctactttctaggaaatttggagttgctgaactcaggctgtaagagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgggtcacatctggctactttctaggaaatttggagttgctgaactcaggctgtaagagt 211
Query: 540 tggcagtgaa 549
||||||||||
Sbjct: 210 tggcagtgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
