BAC Information

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BAC

Clone NameMSMg01-072D08
Chromosome9 (Build37)
Map Location 114,843,409 - 114,843,649
singlet/doubletsinglet
Overlap genenone
Upstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l
Downstream geneLOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D08.T7 (MSMg01no072_d08.b1)MSMg01-072D08.TJ (MSMg01no072_d08.g1)
ACCAG295808AG295809
length722715
length of high quality
(start - end)
71 (44 - 114)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no072_d08.b1 PHD_FILE: MSMg01no072_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:52 2005CHROMAT_FILE: MSMg01no072_d08.g1 PHD_FILE: MSMg01no072_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGAGCCGCGGAAT
TCAATTACTATCTCGGAGTAAAGACAGTGTTTCAATTTAATGTAGATGAA
CTTGGCAGTCAGCGTGAAGAACAAACTTGGACTCTTCTCTCAGAAGGAAG
ACTCCAAAATCAAATCAAAGAGGTTTAGAAGGAAGAAGAACAGGGTGCCC
ACACTGAAGAAGACACGCAGGCAAGGCCTAATGTCCTGAAATCCAAATGC
TATGATAGAAATGTCCTGGTAAACGTGGCTACCTAAAATGTAATAAGCAG
CCACAATCACCACCTATTATGTTTTGTGTAAAGAACTGGGGGGAATAGGA
AAGCTACATAGTATCATTATATGTAGTCATGATACATAGAAGTGAGCTCA
CACAACAGAACTTTTAATGACCCTTAATACTGTTTCTCTTAGGTCCCATT
GTATGCACCTCTTATGACGTCTGGGTAGAGTCGCGTGTGCCTGTGGTCAC
AGCGTTGCCGAGAACAGTTCATATTATAGTTTACTAGGTCTGCTTCAGTC
TTGATCTTGTCCTGCATCCCTTACGTCTGACCCCTCCATTTTTCGACAGC
TCTTGTCTATTTCATGACTTGTTCTTTCTTCCCTCTCTGATCTGTTGTTT
CCCCTCGTTCTGTTTCTTTTTTGTTATAACCCGCTTTCCTATTAGCGTTG
TTTATCCTGTTTCCTTTGTTCG
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCAGATTTGGAGCCTGCGCCTGCTTT
AACAACGGATGTCAAATTCGTATAAACGGGACAAGTCCAGGCACCCCTGA
ATTTCCTAGCGAGCCTGGAGCTTTAAGTCTTCTGCCATTGATCTGGGAGT
ATCTGCTCTACAAGGGTGGCGTCGTACTTCAGTTGGTAGAGAACTAGATT
GAACACAGGAAGTTCAAACACTAGCGCCTGGTGGCTCTGGCCTGTAATCA
CAGCACGTGGGAGACGGAGGTAGAATCTGGAGTCCCAGGTTATATCCTTG
GCCACATAAAAATGGGAGGCCACCTTGTCGCATATAAGTACCCTTGCATT
TCAGGATGGAAAGCTTGCCTACTCAGGATCGAATCAGAAACTTGAACTGT
CCCCCTGATGACTCGTTACCCAAAGGGCATGCCCCTTTGCTCTCCCCGCC
ACGAGCTTCACTAAATAGCCATCCAAACTGTTGTACTGCAATTGGTCGTG
CTGCGTTCGCGAAAAACACAGATGGCGTAATGTTGTGTAATTCCCTCTTC
TGGGAGGTTGAGACAGGACGATTCGTTTTACAATGTCCCCCTTACCTCGA
CTGTGAGTTTGATGTTAACCTGCGTCACGAGTACTCCTATCCCTACCTAT
ACTCTGATTGGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d08.g1 MSMg01no072_d08.g1 CHROMAT_FILE:
MSMg01no072_d08.g1 PHD_FILE: MSMg01no072_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:52 2005
         (241 letters)



>mm_chr9_114843209_114843849
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagatttggagcctgcgcctgctttaacaacggatgtcaaattcgtataaacgggaca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cccagatttggagcctgcgcctgctttaacaacggctgtcaaattcgtataaacgggaca 260

                                                                       
Query: 61  agtccaggcacccctgaatttcctagcgagcctggagctttaagtcttctgccattgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccaggcacccctgaatttcctagcgagcctggagctttaagtcttctgccattgatc 320

                                                                       
Query: 121 tgggagtatctgctctacaagggtggcgtcgtacttcagttggtagagaactagattgaa 180
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tgggagtatctactctacaagggtggcgtcgtagttcagttggtagagaactagattgaa 380

                                                                       
Query: 181 cacaggaagttcaaacactagcgcctggtggctctggcctgtaatcacagcacgtgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaggaagttcaaacactagcgcctggtggctctggcctgtaatcacagcacgtgggag 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)