Query= MSMg01no072_k12.b1 MSMg01no072_k12.b1 CHROMAT_FILE:
MSMg01no072_k12.b1 PHD_FILE: MSMg01no072_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:28 2005
(614 letters)
>mm_chr9_109943386_109944399
Length = 1014
Score = 1009 bits (522), Expect = 0.0
Identities = 537/542 (99%)
Strand = Plus / Minus
Query: 73 tttttttttttttttgatttatttatttattatatacactgtagctgtcctcagatactc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tttttttttttttttgatttatttatttattatatacactgtagctgtcctcagatactc 939
Query: 133 cagaagagggcatcagattttgttacagatagttgtgagccactatgtggctgctgggat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 cagaagagggcatcagattttgttacagatagttgtgagccactatgtggctgctgggat 879
Query: 193 ttgaacttgggaccttcggaagagcagtcggcgctcttaaccactgagccatctcaccag 252
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttgaactcgggaccttcagaagagcagtcggcgctcttaaccactgagccatctcaccag 819
Query: 253 cccctgcctgttaccttttaatcactgtcaaaactaaataatatggtaggattctggaat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cccctgcctgttaccttttaatcactgtcaaaactaaataatatggtaggattctggaat 759
Query: 313 gctttctacatgctacttattctattaaatttcccaaattgttaatagaggagctgagaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gctttctacatgctacttattctattaaatttcccaaattgttaatagaggagctgagaa 699
Query: 373 gaaaaaagcagaaagatgaaaatagcatatgcatcctttcctcacaccacaggtattcca 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaaaaaagcagaaagatgaaaatagcatatgcatcctttcctcacaccacaggtattcca 639
Query: 433 ctccaggtgctcactcatgcatagcaccagcttcccccacgagggcaagtccacaccatg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctccaggtgctcactcatgcatagcaccagcttcccccacgagggcaagtccacaccatg 579
Query: 493 cagagcacagccccacgatgaagccacattgcttggctcaaaacgatcagtgtttttgtt 552
||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 578 cagagcacagcccgacgatgaagccacattgcttggctctaaacgaccagtgtttttgtt 519
Query: 553 ttgtttaactttctcaaggtagtagctggatcatgcaaacttgttaaagaaccatttgct 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgtttaactttctcaaggtagtagctggatcatgcaaacttgttaaagaaccatttgct 459
Query: 613 gg 614
||
Sbjct: 458 gg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_k12.g1 MSMg01no072_k12.g1 CHROMAT_FILE:
MSMg01no072_k12.g1 PHD_FILE: MSMg01no072_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:28 2005
(539 letters)
>mm_chr9_109862997_109863935
Length = 939
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 1 caagtgtgaggtcagc-atgggctacacacaaagactttgttaccaactaactgacctaa 59
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtgaggtcagcaat-ggctacacacaaagactttgttaccaactaactgacctaa 259
Query: 60 agataagttaaagattgcctgacacacatagattgctttcacttcctcctcttttcttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agataagttaaagattgcctgacacacatagattgctttcacttcctcctcttttcttct 319
Query: 120 cccctctcccatttctgctccctcttcttacatcttctttcctctcctttttttggtccc 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcctctcccatttctgctccctcttcttacatcttctttcctctcctttttttggtccc 379
Query: 180 ctttactcactcccaaatttagttgtgtacagattgacaaatcctttacagaaccctttg 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttacccactcccaaatttagttgtgtacagattgacaaatcctttacagaaccctttg 439
Query: 240 tatttgagtagagtatgtagtatgggattgatgtctcttgtgggcatgctcatttacaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatttgagtagagtatgtagtatgggattgatgtctcttgtgggcatgctcatttacaag 499
Query: 300 taatttcaccttctgagaacagcaaggaaaacctaatcacatgtaatactagacaagcag 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 500 taatttcaccttctgagaacagcaaggaaaatctaatcacatgtaatactagacaagcag 559
Query: 360 gatttatgtttatacagtaatggctataattttggtgagcaatttggataaataactacc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 gatttatgtttatacagtaatggctataattttggtgagcaatttggataaataaccacc 619
Query: 420 aattctggtcctgtttctttgtaaactgaaaactgtggtttcttggtaaataattgataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aattctggtcctgtttctttgtaaactgaaaactgtggtttcttggtaaataattgataa 679
Query: 480 gtatttagaagtgtgtatatgaaggggttgatctttacatttatagtctttgctttttaa 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 gtatttagaagtgtgtatatgaaggggttgatctttagatttatagtctttgctttttaa 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
