Query= MSMg01no072_l22.b1 MSMg01no072_l22.b1 CHROMAT_FILE:
MSMg01no072_l22.b1 PHD_FILE: MSMg01no072_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:35 2005
(590 letters)
>mm_chr9_32271917_32272905
Length = 989
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 4 gaattctaggacggcatgcgctacacagtgaagccccttctcaa-cagcccaaacaagca 62
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 gaattctaggacggcatgtgctacacagtgaagccccttctcaaacagcccaaacaagca 262
Query: 63 aacaaacaaataaaccaggtgacgccttccttgcgatcagccccttatgcttgaagaaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aacaaacaaataaaccaggtgacgccttccttgcgatcagccccttatgcttgaagaaga 322
Query: 123 ttgagcccaggcagattttagtcctgtgagctgcaagagcccttcctcttctgccttcat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgagcccaggcagattttagtcctgtgagctgcaagagcccttcctcttctgccttcat 382
Query: 183 ttctgataccttctgcactctttcccatgtggaatttagcccagagctcagaaatgtgac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctgataccttctgcactctttcccatgtggaatttagcccagagctcagaaatgtgac 442
Query: 243 tgtcacactaggatagcagatacaacttcccatggaaacaatacactagggacaggacag 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 tgtcacactaggatagcagatacaacttcccatggaaacaa-acactagggacaggacag 501
Query: 303 acttgctcatcacaaaaatcatccttcagatcaacaagacaaactatcgttctaagacac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acttgctcatcacaaaaatcatccttcagatcaacaagacaaactatcgttctaagacac 561
Query: 363 aactgcatttacacatttacaaatggaaggatccagcctctctggtgaagttattttggt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aactgcatttacacatttacaaatggaaggatccagcctctctggtgaagttattttggt 621
Query: 423 taaggttagttttagctcccgccctgtaattcactttattcaaactcctgacattctgcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taaggttagttttagctcccgccctgtaattcactttattcaaactcctgacattctgcc 681
Query: 483 ccttccacctggcacccactctaaagtggcagtttttgaattccctccatacctaggcag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccttccacctggcacccactctaaagtggcagtttttgaattccctccatacctaggcag 741
Query: 543 ctgagcatactgggcctggcccaggcagcatccagccaataggctaga 590
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctgagcatactgggcctggcccaggcagcatccagccaataggctaga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_l22.g1 MSMg01no072_l22.g1 CHROMAT_FILE:
MSMg01no072_l22.g1 PHD_FILE: MSMg01no072_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:35 2005
(471 letters)
>mm_chr9_32389540_32390410
Length = 871
Score = 872 bits (451), Expect = 0.0
Identities = 466/471 (98%)
Strand = Plus / Minus
Query: 1 tccatggcttttccatgggttttcttcaacacaccagaataactaccttatccaacgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 tccatggcttttccatgggttttcttcaacacaccagaataactaccttatccaatgata 612
Query: 61 aaaatcagcccccgaaggttccggcctcgaataaaggatgcctcaggctgtcttaaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 611 aaaatcagcccccgaaggttccggcctcgaataaaggatgcctcaggctgtctgaaatcc 552
Query: 121 ttgtgcggaacctgaagaggaagtgtgaggatttggggcaagtggagaatgtcgtggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgtgcggaacctgaagaggaagtgtgaggatttggggcaagtggagaatgtcgtggaga 492
Query: 181 gataagagtgaaacaggaaggaagaaaggaaagggaggaagaaagcaggctgtgtggagc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gataagagtgaaacaggaagaaagaaaggaaagggaggaagaaagcaggctgtgtggagc 432
Query: 241 gctctggccactgggctcctccactccacacagtgaacccatgaaagcttagcaggacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctctggccactgggctcctccactccacacagtgaacccatgaaagcttagcaggacac 372
Query: 301 acggcttccgatggaaacaggaagcttgtgaggaagtctaggagagaaagggctgtctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acggcttccgatggaaacaggaagcttgtgaggaagtctaggagagaaagggctgtctta 312
Query: 361 gaagataaacctatgccccataaacccataggtggtgcctggttggccataagctaagac 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 311 gaagataaacctatgccccataaacccataggtagtgcctggttggccataagctaagac 252
Query: 421 aaacaggaacgtcaaagggtgctcagattttaagaaacacagcaatctggc 471
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 aaacaggaacgtcaaagggtgctcaggttttaagaaacacagcaatctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
