BAC Information

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BAC

Clone NameMSMg01-072O01
Chromosome9 (Build37)
Map Location 25,618,937 - 25,619,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072O01.T7 (MSMg01no072_o01.b1)MSMg01-072O01.TJ (MSMg01no072_o01.g1)
ACCAG296312AG296313
length694693
length of high quality
(start - end)
630 (40 - 669)608 (71 - 678)
definitionCHROMAT_FILE: MSMg01no072_o01.b1 PHD_FILE: MSMg01no072_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:46 2005CHROMAT_FILE: MSMg01no072_o01.g1 PHD_FILE: MSMg01no072_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCCGCGGAATTC
AAACACAAGAATCTCCAACAGCTGAGAAGCATTTCAAGAAATGTTTAAAG
TCTATAGTCATCAAGGAAATGCAAATAAAATGACCCTGAGATTCCACCTC
ACACCAATAGAATGGCTAAAATAAAATAAAAAAAAAAACAAAAAACAAAA
AACAAAAAAACAAATAAACAAAAAAAAAAAACTCAGGTGACAGCAGATGC
TGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGCCAGATTG
CAAGCTGGTATAACCACTCTGGAAATCAGTCTGGTGGCTCCTCTGAAAAT
TGGAAATGGTTCTACCCAAAGACCCAACTATACCACTCCTGGGCATACAC
ACAAAAATGCCGCACTATACCACAAGGACACATGGTCCACTAAGTTCATG
GCATCTTTATTAGTAGTAGTCTGAAGCTAGAATCCCAGATGTCCCTCAAC
TAAACAATGTATACAGAAAATATGGTTCATTTAAACAATGGAATTCTATT
CAGCTATTAAGAATGAGGACATCATAAATTTTGGAGGCAAATGGGTGGAA
CTAGAAAATATCATCCTGAGTGAGGTAACCTAGACCCAAGGTACATATAT
GGTATGCTGTCCCTAATAAGTGGATATTAGGGAAAAATGCCCAG
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGAAACTGGACAGACAGAGAGCCAAGAAC
AAAATTGCAAAGGAGACCAACAACAAGCAAAAAGAGTTTGAAGAGACTGC
AAAGACTACCCGTCAGTCAATTGAGCAGCTGGCTGCCTAATGCTGAGCCT
TTGCTGAGATAACTTGGACCTGAGTGACATGCCACATCTAAGCCACGCAT
CCCAGCTTTTCCAGCCAGGGCCTCCTAGCAGGATCTTAGAGAAGGAGACA
GTGGTATTTTGAAACTGGATATCAAATATTTTTGGTTTTGCTTTAAAGTG
GCTACCTCTCTTTGGTTTTGTGGCTTTGCTCTATTGTGACATCCTCTAAA
GTGATATTATTTCACTCCCAGGGCAATAAATACATTTATTAACACCTTAT
AAATTAAAAATGACAAAGACTGAAATATTACCTCGTTTTTTCCTAACTAG
AAATATATTTTCAATTTGAGAATAAACAGTACCGTTTGTTAATTTTTATG
CACATTAATATTTATAGTTATCCATATAAAATTATATTTGCAAGAATGGG
TTTTAGTTCAAGTCATGATATTTCACAATAAGGATAAACACAAAATATTT
ACTATGTGGCTACATAAATGCATATGTTAACCGAATTACGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_o01.g1 MSMg01no072_o01.g1 CHROMAT_FILE:
MSMg01no072_o01.g1 PHD_FILE: MSMg01no072_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:46 2005
         (608 letters)



>mm_chr9_25618724_25619733
          Length = 1010

 Score =  499 bits (258), Expect = e-145
 Identities = 304/322 (94%), Gaps = 6/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaactggacagacagagagccaagaacaaaattgcaaaggagaccaacaacaagcaa 60
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgaaactg----gacagagagccaagaacaaaattgcaaaggagaccaacaacaagcaa 476

                                                                       
Query: 61  aaagagtttgaagagactgc--aaagactacccgtcagtcaattgagcagctggctgcct 118
           ||||||||||||||||||||  |||||||||| |||| ||||||||| ||||||||||||
Sbjct: 475 aaagagtttgaagagactgcaaaaagactaccggtcaatcaattgagaagctggctgcct 416

                                                                       
Query: 119 aatgctgagcctttgctgagataacttggacctgagtgacatgccacatctaagccacgc 178
            |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 415 catgctgagcctttgctgagataacctggacctgagtgacatgccacatgtaagctactc 356

                                                                       
Query: 179 atcccagcttttccagccagggcctcctagcaggatcttagagaaggagacagtggtatt 238
            ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct: 355 gtcccagcttttccagcctggacctcctagcaggatctcagagaaggagacagtggtatt 296

                                                                       
Query: 239 ttgaaactggatatcaaatatttttggttttgctttaaagtggctacctctctttggttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgaaactggatatcaaatatttttggttttgctttaaagtggctacctctctttggttt 236

                                 
Query: 299 tgtggctttgctctattgtgac 320
           ||||||||||||||||||||||
Sbjct: 235 tgtggctttgctctattgtgac 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space:   598000
Effective search space used:   598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)