ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATT
CTATCCCCATCACCGCTTTAACTGTGAGTGACCATGGGCACCTGCTATCC
CAGCATTTGGGACATAGAGGGAGGAAGATCAGAAGTTCAAGGTCATTCTC
AGCTACACCATAATTCAAGGCTAGCCTGGGCTACATGAAAAAATAAGGGT
GTGTCCCAAACTGGAGTTGTCATAGTGGAGGGATTCTTTCTCCTAGGGTA
GAGGCTCATAAACTATAGGATATTTGATACCCACCCCCAAATACACACAT
ACAATGTATTGGAAATACCCATTTCAGGGCCACACACATCCCTCCAAGAT
TATATCCCACAGATTCCTGGATTGTTTATTTGTTTGTTTGTTTGTTTACA
AACATGCAGGAGCTCTGAATATCACATTTTAAAAAACAAGATAAAATCAA
GAAAAACAAACTTCTAGTGGCTGTCAGTCTTTGTTACATTTCAGAATCAC
CTAAAGTGTGTTTCCCAGGTAAGCTACCAAACTGGCTTTTGCCAAGAGAA
AAGCTGCAAAGGGTAGTTTGGCTCTCACAGCCTCTGCTCTGGCTCAAATG
GGCCAGGGTGATCTGTTTAACAGGAAGGTCTGACTCAGCTTGTTTTATAG
TGTTAGAACCTAGATTCTGTCTTGCTAATAACTTAAATACTGTGTAATGC
TG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGTACACTGTGTGTGAATGCTGTTCATTT
ATTATGAAAGTAAGCCATATGGACTCAACATTCAGAAGTATCTATAACGA
GTTAAAAAATCTCACTGGATTAATGGTTGGTTGGCCAGAGGTACTAAGAA
AATGTAGGCACATGGAGATGAGAAGATAATGTAACAGAACTGACTCTGTA
GTAGCTTGAATGGCTGGTGTGAGATATATAAGTCACACTAGTACACAGCA
GGATGGTTCTTTTTCACACCTGTTTCCATACCTACAATTACCTAAATATC
TGTCAATCAAAAGTAAAAAGGCCAGAACTGTTGTAAAAATATATTATCTT
GGCATCAAAGATTAGCTAATACTCTTGTTAAGGCCTATAATATACAACTG
ATTTTTTAAAGTATGAACTACTATTAAGAAGTAATTGTAGGCACTGTTGA
AGCATGACAGCTGCCTGGTCACAGGACACCACATTACAGAAAGAAAACAG
GTAAAACATTTAAAAGGACTATACCTCAATCCTTAGTTCCTAGCAAATAC
TAGGAATGCCTGTCCAAGTTCCACTTAACAGATGCTTGCCACAACTAACC
CTCCCCCCCAGTTTTATCTTAAACATATTTCTGTATTTAGAGATAATT

Query= MSMg01no072_o12.b1 MSMg01no072_o12.b1 CHROMAT_FILE:
MSMg01no072_o12.b1 PHD_FILE: MSMg01no072_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:48 2005
         (476 letters)



>mm_chr9_69685099_69685974
          Length = 876

 Score =  868 bits (449), Expect = 0.0
 Identities = 467/473 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctatccccatcaccgctttaactgtgagtgaccatgggcacctgctatcccagca 63
           ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctattcccaacactgctttaactgtgagtgaccatgggcacctgctatcccagca 263

                                                                       
Query: 64  tttgggacatagagggaggaagatcagaagttcaaggtcattctcagctacaccataatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 tttgggacatagagggaggaagatcagaagttcaaggtcattctcagctacaccatagtt 323

                                                                       
Query: 124 caaggctagcctgggctacatgaaaaaataagggtgtgtcccaaactggagttgtcatag 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caagactagcctgggctacatgaaaaaataagggtgtgtcccaaactggagttgtcatag 383

                                                                       
Query: 184 tggagggattctttctcctagggtagaggctcataaactataggatatttgatacccacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggagggattctttctcctagggtagaggctcataaactataggatatttgatacccacc 443

                                                                       
Query: 244 cccaaatacacacatacaatgtattggaaatacccatttcagggccacacacatccctcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccaaatacacacatacaatgtattggaaatacccatttcagggccacacacatccctcc 503

                                                                       
Query: 304 aagattatatcccacagattcctggattgtttatttgtttgtttgtttgtttacaaacat 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aagattatatcccacagattcctggattgtttgtttgtttgtttgtttgtttacaaacat 563

                                                                       
Query: 364 gcaggagctctgaatatcacattttaaaaaacaagataaaatcaagaaaaacaaacttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaggagctctgaatatcacattttaaaaaacaagataaaatcaagaaaaacaaacttct 623

                                                                
Query: 424 agtggctgtcagtctttgttacatttcagaatcacctaaagtgtgtttcccag 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtggctgtcagtctttgttacatttcagaatcacctaaagtgtgtttcccag 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_o12.g1 MSMg01no072_o12.g1 CHROMAT_FILE:
MSMg01no072_o12.g1 PHD_FILE: MSMg01no072_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:48 2005
         (535 letters)



>mm_chr9_69853666_69854600
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggtacactgtgtgtgaatgctgttcatttattatgaaagtaagccatatggactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 actggtacactgtgtgtgaatgctgttcatttattatgaaagtaagccatatggactcaa 676

                                                                       
Query: 61  cattcagaagtatctataacgagttaaaaaatctcactggattaatggttggttggccag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cattcagaagtatctataacaagttaaaaaatctcactggattaatggttggttggccag 616

                                                                       
Query: 121 aggtactaagaaaatgtaggcacatggagatgagaagataatgtaacagaactgactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aggtactaagaaaatgtaggcacatggagatgagaagataatgtaacagaactgactctg 556

                                                                       
Query: 181 tagtagcttgaatggctggtgtgagatatataagtcacactagtacacagcaggatggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagtagcttgaatggctggtgtgagatatataagtcacactagtacacagcaggatggtt 496

                                                                       
Query: 241 ctttttcacacctgtttccatacctacaattacctaaatatctgtcaatcaaaagtaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctttttcacacctgtttccatacctacaattacctaaatatctgtcaatcaaaagtaaaa 436

                                                                       
Query: 301 aggccagaactgttgtaaaaatatattatcttggcatcaaagattagctaatactcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggccagaactgttgtaaaaatatattatcttggcatcaaagattagctaatactcttgt 376

                                                                       
Query: 361 taaggcctataatatacaactgattttttaaagtatgaactactattaagaagtaattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taaggcctataatatacaactgattttttaaagtatgaactactattaagaagtaattgt 316

                                                                       
Query: 421 aggcactgttgaagcatgacagctgcctggtcacaggacaccacattacagaaagaaaac 480
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 315 aggcactgttgaagcatgacagctgcctggccacaggacaccacatttcagaaagaaaac 256

                                                                  
Query: 481 aggtaaaacatttaaaaggactatacctcaatccttagttcctagcaaatactag 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aggtaaaacatttaaaaggactatacctcaatccttagttcctagcaaatactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)