BAC Information

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BAC

Clone NameMSMg01-073B04
Chromosome9 (Build37)
Map Location 107,603,318 - 107,603,941
singlet/doubletsinglet
Overlap geneSema3f
Upstream geneRad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1
Downstream geneRbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B04.T7 (MSMg01no073_b04.b1)MSMg01-073B04.TJ (MSMg01no073_b04.g1)
ACCAG296461AG296462
length677747
length of high quality
(start - end)
627 (51 - 677)---
definitionCHROMAT_FILE: MSMg01no073_b04.b1 PHD_FILE: MSMg01no073_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005CHROMAT_FILE: MSMg01no073_b04.g1 PHD_FILE: MSMg01no073_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCCCTCTCGACCCCTCTACCCCAGCAGGTCCTTCCCAG
CCACCATCTCCCTAACCAAAAGTCTGAATTCTGGGAAGGTGAGGAGCCCT
TGGGGCATGGCCCCATCAACCCTCACCTGTCAGCCACCATCCTGGTCACT
GTGCCTTTCTTCTCTGCCAGGGACAGTAGCCACATAATCCACCACAATGA
AGTCAGAACTATTCCCAGCCCCATTTTCCAGAAGGCAGTGGGGACAGGCA
AGTTTGCTGTTCAAGGTGTATTGATAACCACAATGCAAACAAGATAGCTC
TCTGGATGGGCTGGCAGCACAGGCCTCTAATCCCAGACACCCCAGACGCT
GAGACAGAAGGATCTCAAATCCAGGGCCTGCATGTCCTACAGTTGAGGCT
GTTTTCAGGGTGCTACCACCATTTCCACCTTATGAAGGGGAAACCGGGGC
TCAGAGAGCCTAAGCCACATTATGGAATTCACACAGCCACCAGGGGTAGG
TTTGGAGTTTGACCACATCCGTATGATACTCTCTAAATGAAGGAGGCACT
CGGGCCCCCTAGTAATCAGGAACCAGGAAGCCATCTTCTAAGCTCTAGAG
AATGGGAGGGGTGAAAGGTGTGTGCAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTNCNCCAAGGNGGNNNAAAAACCCCC
TAGAGGGGGTCNCTTTCCTCTCCCCCCCTCTAAATAAAAAAAGGTGTGTC
TTCTCTCCCCTTTTAAACAAACCTTTTTTTTCTCAAAATAACCCCTCCTC
CCCTCCAACCAAGATGCATTCCCTGGTTCTTCAAAAAAAAAAAAATTTTT
AAATCCCCAACCCCCCACCCAAAAACAAAAAAAAAAGGGTGGGATTTTTA
CCAAAAAAAAATGGTTATTAAAAGGTTTTTAATGAATGGGCTGGGGGTTT
TAAATCAAGGTCCAGAAAAGGGGTGGTGGGACAATATAACCCCCTTTTAA
AAATTTTTTTTTAGAATACCCCTTTCCCGGGGGTATTTCCAAACCCCTCC
CCCAAAAAAAGAAAACCCGGGGGAAAATTTTTGGGGTAAAAACCCTAAAT
TGGGGGGGGGGGGGAAAAAAAAATAAAAAAAAGGGGGGGGGCGGTTTTTA
TTTCTTTTTCACCNCCCACCCCCCTATACCTCTTTTTCCCTTTGCCAACA
ATACCCCCCTTTTTTTTTTTTCTCTCCTCCCCCCCCCCCCCCTCTTAGTT
TTCTTCTCCCTTTTCCTTCTGCTTCTCTTTTCCTCCCCTCTCTCCCTTTT
CTTTTCTTCTCCCCCCCTTTCTTTAACCCACTGCTTTCCCACCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b04.b1 MSMg01no073_b04.b1 CHROMAT_FILE:
MSMg01no073_b04.b1 PHD_FILE: MSMg01no073_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:02 2005
         (627 letters)



>mm_chr9_107603115_107604141
          Length = 1027

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctccctctcgacccctctaccccagcaggtccttcccagccaccatctccct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctccctctcgacccctctaccccagcaggtccttcccagccaccatctccct 263

                                                                       
Query: 64  aaccaaaagtctgaattctgggaaggtgaggagcccttggggcatggccccatcaaccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaccaaaagtctgaattctgggaaggtgaggagcccttggggcatggccccatcaaccct 323

                                                                       
Query: 124 cacctgtcagccaccatcctggtcactgtgcctttcttctctgccagggacagtagccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacctgtcagccaccatcctggtcactgtgcctttcttctctgccagggacagtagccac 383

                                                                       
Query: 184 ataatccaccacaatgaagtcagaactattcccagccccattttccagaaggcagtgggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataatccaccacaatgaagtcagaactattcccagccccattttccagaaggcagtgggg 443

                                                                       
Query: 244 acaggcaagtttgctgttcaaggtgtattgataaccacaatgcaaacaagatagctctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaggcaagtttgctgttcaaggtgtattgataaccacaatgcaaacaagatagctctct 503

                                                                       
Query: 304 ggatgggctggcagcacaggcctctaatcccagacaccccagacgctgagacagaaggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggatgggctggcagcacaggcctctaatcccagacaccccagacgctgagacagaaggat 563

                                                                       
Query: 364 ctcaaatccagggcctgcatgtcctacagttgaggctgttttcagggtgctaccaccatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcaaatccagggcctgcatgtcctacagttgaggctgttttcagggtgctaccaccatt 623

                                                                       
Query: 424 tccaccttatgaaggggaaaccggggctcagagagcctaagccacattatggaattcaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccaccttatgaaggggaaaccggggctcagagagcctaagccacattatggaattcaca 683

                                                                       
Query: 484 cagccaccaggggtaggtttggagtttgaccacatccgtatgatactctctaaatgaagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagccaccaggggtaggtttggagtttgaccacatccgtatgatactctctaaatgaagg 743

                                                                       
Query: 544 aggcactcgggccccctagtaatcaggaaccaggaagccatcttctaagctctagagaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 aggcactcgggccccctagtaatcaggaaccaggaagccatcttctaagctctggagaat 803

                                   
Query: 604 gggaggggtgaaaggtgtgtgcac 627
           ||||||||||||||||||||||||
Sbjct: 804 gggaggggtgaaaggtgtgtgcac 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)