BAC Information

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BAC

Clone NameMSMg01-073B09
Chromosome9 (Build37)
Map Location 84,468,402 - 84,468,735
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B09.T7 (MSMg01no073_b09.b1)MSMg01-073B09.TJ (MSMg01no073_b09.g1)
ACCAG296471AG296472
length691693
length of high quality
(start - end)
560 (43 - 602)372 (77 - 448)
definitionCHROMAT_FILE: MSMg01no073_b09.b1 PHD_FILE: MSMg01no073_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:03 2005CHROMAT_FILE: MSMg01no073_b09.g1 PHD_FILE: MSMg01no073_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAATTTACTTCTATAACTCATTTTTTGATTAGGTTTGGATTTTTGAT
GGTTAGCTTCTTGAGTTCTTTATACACTTTGGATATTACCCCTTTATCAG
ATGTAGGGTTAGTGAAGAATTTTTTCCCAATCTGTAGGTTGCTGATTTGT
CTTAGTGCCTAGGTCTTTTCCCGTACAGAACCTTACAAAGCTTTTTGGAT
TTTATCTGATTTACTATGTACATGGGTGCTTTAGGTGTCTTCTAAATAAA
AATCCCATTCTGATGATGCTGAAAGTCCACTTATGCTTTTGCAGGAGGTA
TTTTTAATTTTAGATCTTATATTTAAGATTTTAATCAATTTTGGATTGAT
TTTTACAACTGGTAAGATATAGGTTATCTGGTTCCACTTTTGTTCATGGG
TGTTCACTCTTCTTAACATTTTGGAAAAGACTGCAACTCTTCTTTGTCTG
CATTTATATGAAAACCACTCTGCATTGCCGCAACCTTGAAGGATGTTTTG
AAATCAGCTATCATATGTTAACCAGCTTATTATTTTAGTAAGCTATCCTT
GCGATGCATGTTACTTACTATTTTTAGCAGCCCATTCTACTTATTACTAG
AATTCCATTCCTACTCTTACTGAGACTTTAATATTCATACG
NCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGATCTTTCCAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTCGAATGCTTTTTCCGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGATG
GATTTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTG
TTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAAGAA
CTTTATTGATGATTTTTGCTTCAATATTCATAAGGGATATTGGTCTGAAG
TTCTCTATCTTTTTGGGGCCTTTTTGTGGTTTAGGTATCAGAGTAATTGT
GGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGA
ACAGCTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATT
GATGACTGCTTTGATTTCTTTGGCGGATATCGCGCTGTTTAGATCACTTA
CCCGATCTTGATTCAACTTTGGTACCTGGCAACTGTTTAGAAACTTCTCC
ATTTCCTCTTTGTTCTCCAGTTTTGTTGAGTATAACCTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b09.b1 MSMg01no073_b09.b1 CHROMAT_FILE:
MSMg01no073_b09.b1 PHD_FILE: MSMg01no073_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:03 2005
         (560 letters)



>mm_chr9_84467776_84468735
          Length = 960

 Score =  607 bits (314), Expect = e-178
 Identities = 329/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 226 gtacatgggtgctttaggtgtcttctaaataaaaatcccattctgatgatgctgaaagtc 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gtacatgggtgctttaggtgtcttctaaataaaaatcccattctgatgatgctgaaagtc 901

                                                                       
Query: 286 cacttatgcttttgcaggaggtatttttaattttagatcttatatttaagattttaatca 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cacttatgcttttgcaggaggtatttttaattttagatcttatatttaagattttaatca 841

                                                                       
Query: 346 attttggattgatttttacaactggtaagatataggttatctggttccacttttgttcat 405
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 840 attttggattgatttttacaactggtaagatataggttatctgattccacttttgttcat 781

                                                                       
Query: 406 gggtgttcactcttcttaacattttggaaaagactgcaactcttctttgtctgcatttat 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gggtgttcactcttcttaacattttggaaaagactgcaactcttctttgtctgcatttat 721

                                                                       
Query: 466 atgaaaaccactctgcattgccgcaaccttgaaggatgttttgaaatcagctatcatatg 525
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 720 atgaaaaccactctgcattgccgcaaccttgcaggatgttttgaaatcagctatcatatg 661

                                             
Query: 526 ttaaccagcttattattttagtaagctatccttg 559
            ||| |||||||||||||||||||| ||||||||
Sbjct: 660 ctaatcagcttattattttagtaagttatccttg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)