Query= MSMg01no073_i21.b1 MSMg01no073_i21.b1 CHROMAT_FILE:
MSMg01no073_i21.b1 PHD_FILE: MSMg01no073_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:39 2005
(243 letters)
>mm_chr9_101511355_101511997
Length = 643
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 5 gaattcactgtcttctgcatctgcctccagggtgctgggattacaggtgtgcactgccgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattcactgtcttctgcatctgcctccagggtgctgggattacaggtgtgcactgccgt 470
Query: 65 gcccagcctttcgcaagtgtttgctgacataccagatcaccagatcactatcttcttagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcccagcctttcgcaagtgtttgctgacataccagatcaccagatcactatcttcttagg 410
Query: 125 aaaataatagaagagaggatgctcaggctgggaatttgacagaggaataagactggctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaataatagaagagaggatgctcaggctgggaatttgacagaggaataagactggctag 350
Query: 185 atacaagaagttggaggaaaaggcaagtgaacaatggagttgggggtggggtgaggtgg 243
||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct: 349 atacaagaagttggaggaaaaggcaggtgaacaatggagttgggagtggggtggggtgg 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_i21.g1 MSMg01no073_i21.g1 CHROMAT_FILE:
MSMg01no073_i21.g1 PHD_FILE: MSMg01no073_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:39 2005
(580 letters)
>mm_chr9_101372043_101373021
Length = 979
Score = 1029 bits (532), Expect = 0.0
Identities = 568/580 (97%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 1 agctttggtgagtcattctcagtgggtttttttggtgatgcaattgcctttaaactgtcc 60
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgctgagtcattctcagtggggttttttggtgatgcaattgcctttaaactgtcc 260
Query: 61 ttgttcatgtaagtggccccttatccatactcctgtgagtaaccccaataaactcactgg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcatgtaagtggcctcttatccatactcctgtgagtaaccccaataaactcactgg 320
Query: 121 tttactggccttgactctgatgggattattgctttggcctgtcattggggttctatctgg 180
|||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 321 tttactggccttgactatgatggaatcattgctttggcctgtcattggggctctatctgg 380
Query: 181 attgagtccatgttttgttcatggctcaccaatgaaagtcaccaagaaaggtatgtgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 attgagtccatgttttgttcatggctcaccaatgaaagtcaccaagaaaggtacgtgact 440
Query: 241 ttataaaggctatcatgtctccagccccttctttcattgcttcctttgcccttgaagtga 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttataaaggctatcaggtctccagccccttctttcattgcttcctttgcccttgaagtga 500
Query: 301 tcggctttgctgtaccatccatcccttgtcatgatgttctacctcatcataggtctcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcggctttgctgtaccatccatcccttgtcatgatgttctacctcatcataggtctcaaa 560
Query: 361 acatggagtcagcccatcatggactaagtcccctgaaaccataagctcaaataaatgctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatggagtcagcccatcatggactaagtcccctgaaaccataagctcaaataaatgctc 620
Query: 421 tctcatttaaagttgactttctcagatttgttgtcactgggatgaaaagatgagaaacac 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tctcatttaaagttgactttctcagatttgttgtcactgtgatgaaaagatgagaaacac 680
Query: 481 aaacttctggcagctaaagaaacctacatgttgcacgactcaaatagtatggtaaaatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacttctggcagctaaagaaacctacatgttgcacgactcaaatagtatggtaaaatac 740
Query: 541 ttactccttctggatttaattattccatttacacagtcca 580
||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 741 ttactccctctggatttaattattc-atttacacagtcca 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
