BAC Information

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BAC

Clone NameMSMg01-073J13
Chromosome9 (Build37)
Map Location 43,052,401 - 43,052,626
singlet/doubletsinglet
Overlap genenone
Upstream geneSc5d, Tecta, Tbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf
Downstream geneD630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J13.T7 (MSMg01no073_j13.b1)MSMg01-073J13.TJ (MSMg01no073_j13.g1)
ACCAG296854AG296855
length708712
length of high quality
(start - end)
---225 (75 - 299)
definitionCHROMAT_FILE: MSMg01no073_j13.b1 PHD_FILE: MSMg01no073_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:42 2005CHROMAT_FILE: MSMg01no073_j13.g1 PHD_FILE: MSMg01no073_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCGGGGGGAGNNCCTTTCCCTACCGCNCCGNGGAAGGAANG
TTTTCCANNCACCGAGGAGNAAGANGGGAANANACAACNCACACAAAGCA
CGCGAAAGGCACACCACAGGACGCCCAACACCAGCAGACACCGGAGAACA
CCAAACACCAAAGCAAGCCCCCGCACGCCCACCACAGCGGCCGAAACGAA
CGACAGACCACNCCAAGGACCAGAAGCAACAGCAACCCAGCCGTTGTAGA
GAGGCCCAGCACAGANAACACACAAACACCCCCACAAAGGGCCAAAACAC
ACACAAGGTTTTTTTTTTTTCAGCCCACCCNAGAGAAACGCAAACCAAAG
TCTTTACCACCCCCACCAGAATGTCCAACGTAAACTCATTAGTCCAAGAC
TTGCCCCCACTATACCCACCAACAGTTGAATGACTATACGTCATTCTATA
CCCCTATACTGCCCTCCAAGACAAAGAACTGACCTATTGATGCACATCCC
ATATCTCACCCATAAGAACTATACCTTCTATAACACCTGATAAATAACAC
ATCACAAACTGACTGAGACCATCTCAATAGACTCCTTCCACACTTATCCC
ACTGCGTTAAGAACCATTTTCCTTTTTACGTCTCTAACTATGCTCCCCTT
TTCTTTTTTTTCCTACCGCACACCACCCCGAACATCCCGGTCTTCCTTGT
ATCATCCA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTCCTTCGTGTAAGTGCTAGG
ATAGAACTCAGGCTTAGAACTTAGTGCCTTTACCCATAAGCCACTGTAAC
TTTTTAGATGGCTCTGGTTCTCTCTTGAGCTAAGGAGCTTCTGCACTCGC
TGTGACCTATCACCTGCTTGTAGCACTTCATACCACAGGGACGAGCTCTC
CTGGACACCAGTTGCCTGCCTGAGGGAAGCAGTTCATTGAGAAACTAGCT
GACAGGGCGGGCAGGACTTTCTTGCGCCCTCAGGCTTCCGGTCTATACGC
TGACACATCTGCCTTTCTGTATAGCTCAGATCATTCAAGCCTGAAAGTCA
CCGAATCAGGCTGGCTCCCCTCCATCTGGCTTCCCACCTGACAACGAATG
GCTGTCCTTGACATTCATCTATTTCTGTTTTCCTCCTTCTGCAACGGTTA
TCGTCGCTCCGCTCTGAGTCCCACCACATCCTCAGTGCATACACTTCTAT
TCCGTTGCCCTCCTACACCTAGTTTGCGCTTCTGCTGCATCATTCGACGC
TTTTGCACTCTTGCACATACCTTTTATCCAGATCAATGACTGACCCATTC
TCTTTCTGGCACCTCCCCTCCAACTTTAACCTTATGCGGCTTGCTCCAAC
TCTCCCCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j13.g1 MSMg01no073_j13.g1 CHROMAT_FILE:
MSMg01no073_j13.g1 PHD_FILE: MSMg01no073_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:42 2005
         (225 letters)



>mm_chr9_43052201_43052826
          Length = 626

 Score =  406 bits (210), Expect = e-118
 Identities = 222/226 (98%), Gaps = 1/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccttccttcgtgtaagtgctaggatagaactcaggcttagaacttagtgcctttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctccttccttcgtgtaagtgctaggatagaactcaggcttagaacttagtgcctttacc 367

                                                                       
Query: 61  cataag-ccactgtaactttttagatggctctggttctctcttgagctaaggagcttctg 119
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 366 cataagcccactgtaactttttaggtggctctggttctctcttgagctaaggagcttctg 307

                                                                       
Query: 120 cactcgctgtgacctatcacctgcttgtagcacttcataccacagggacgagctctcctg 179
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 306 cactcgctgtgacctatcacctgcttgtagcacttcatagcacagggacgagctctcctg 247

                                                         
Query: 180 gacaccagttgcctgcctgagggaagcagttcattgagaaactagc 225
           |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 gacaccagttgcctgcctgagggaagcagttcatggagaaactagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space:   133272
Effective search space used:   133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)