BAC Information

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BAC

Clone NameMSMg01-073J21
Chromosome9 (Build37)
Map Location 103,821,748 - 103,822,114
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978
Downstream geneNphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J21.T7 (MSMg01no073_j21.b1)MSMg01-073J21.TJ (MSMg01no073_j21.g1)
ACCAG296870AG296871
length706718
length of high quality
(start - end)
371 (67 - 437)405 (73 - 477)
definitionCHROMAT_FILE: MSMg01no073_j21.b1 PHD_FILE: MSMg01no073_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:44 2005CHROMAT_FILE: MSMg01no073_j21.g1 PHD_FILE: MSMg01no073_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCAAAC
TCGGTTGCATCCATGTTCTTATCCTTAGACAAGAGAGGGGCCATAACAAG
ATGGAATGACTGAACAGACGGGAGAGATGATGGTACAGTGACTCGGGTAA
CCCCAGAAAAGGGACAGCTCTTCTACAGCCCAGTGGGGACAGGGACAAAA
GGAAACAATTTCATTTCAGTCCACCCAGAGGGTCTGCACTTCTCGGAGCC
AGAAGGTGGAGAGGAGTAGGGATGGAGGAAGTTCGGAGTTTTAGGAGTCC
GCTCTTGGGGCTCCCTAGGTATGAGGACAAGCTTTTCCTGTACTCAATGC
TCATCTCTCAGGTGTGCCCACATTGGCACACATTACTTGCTTTCAACTGC
TGCTGCTGCTGCCTCCAAATTCAATAAAGATATGGTTGGCTCAGCAAAGA
GCTGTCATCCATCCCTGTGTGTGCTGAACCTTCAAGGTAGAACCCAGTTT
CTGTGTCACATCTTCATCTCAGGTTCAACCATTTTGGCTGGAGGTGCACG
GCAGACTCCAGATGAGCAATTTGGGCCTGATAGACCAATCTTTCTGTAGA
ACTGCTTCAACAGTGCGTTTCGATAGTGATAGGCATTATTGCTACTGCGA
GGTTACTAGCGTAATCCACAGTCCTCACACTCCCAGTTACTAGTCCCCTT
CTGTCC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGATCGTGGGCCCACTGTCGTACTTC
TCTAGCTGTGAAATGAGTTCCTTGGTCAGAAGCAATACTGTGTGGAATAC
CATGATGATAGATAAGGCATTCTGTTAGTCCGTGAATGGTGGTTTTAGCA
GAGGCATTACGTGCAGAAAAGGCAAATCCATAACCAGAATAAGTATCTAC
TCCAGTAAGTCTTACACGCGTTCTCGCGACCGGCCAGGAAGAACGCAACA
AACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAA
GAGAGCAAGAGAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAAC
AAGAAAGCAAGAGAAAGAACAAGAAAGCAAGAGAGAGAAAGCAAGAGAGA
GAAAAAGCAAGAACAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAAAAA
GCATGAACAAGAGAGAGAAAAAGCAAGAACCAGAGAGAGAAAAAGAATGG
CAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTA
CTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCTCGAGAAAGGC
AGAACACATGGCGCGAAAACTGCCCCTGCCCATGTGCAGATTATGCTTAC
TACTTAACATCCAGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j21.b1 MSMg01no073_j21.b1 CHROMAT_FILE:
MSMg01no073_j21.b1 PHD_FILE: MSMg01no073_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:44 2005
         (371 letters)



>mm_chr9_103821548_103822316
          Length = 769

 Score =  601 bits (311), Expect = e-176
 Identities = 354/369 (95%), Gaps = 2/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttatccttagacaagagaggggccataacaagatggaatgactgaacagacgggagag 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 567 tcttatccttagacaagagaggggccataacaagatggaatgacggaacagacgtgagag 508

                                                                       
Query: 61  atgatggtacagtgactcgggtaaccccagaaaagggacagctcttctacagcccagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 507 atgatggtacagtgactcgggtaaccccagaaaagggacagctcttctacagctcagtgg 448

                                                                       
Query: 121 ggacagggacaaaaggaaacaatttcatttcagtccacccagagggtctgcacttctcgg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggacagggacaaaaagaaacaatttcatttcagtccacccagagggtctgcacttctcgg 388

                                                                       
Query: 181 agccagaaggtggagaggagtagggatggaggaagttcggagttttaggagtccgctctt 240
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 387 agccagaaggtggagaagagtagggatggaggaagttcgaagttttaggagtctgctctt 328

                                                                       
Query: 241 ggggctccctaggtatgaggacaagcttttcctgtactcaatgctcatctctcaggtgtg 300
           |||  |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 ggg--tccctaggcatgaggacaagcttttcctgtactcaatgctcatctctcagttgtg 270

                                                                       
Query: 301 cccacattggcacacattacttgctttcaactgctgctgctgctgcctccaaattcaata 360
           |||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||||||
Sbjct: 269 cccacattggtacacattacttgctttcaactgctgctgctgctgtttcctaattcaata 210

                    
Query: 361 aagatatgg 369
           |||||||||
Sbjct: 209 aagatatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 769
Length adjustment: 9
Effective length of query: 362
Effective length of database: 760
Effective search space:   275120
Effective search space used:   275120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)