BAC Information

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BAC

Clone NameMSMg01-073O08
Chromosome9 (Build37)
Map Location 113,018,161 - 113,018,332
singlet/doubletsinglet
Overlap genenone
Upstream geneArpp21, LOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391
Downstream geneLOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073O08.T7 (MSMg01no073_o08.b1)MSMg01-073O08.TJ (MSMg01no073_o08.g1)
ACCAG297082AG297083
length705706
length of high quality
(start - end)
42 (182 - 223)173 (160 - 332)
definitionCHROMAT_FILE: MSMg01no073_o08.b1 PHD_FILE: MSMg01no073_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:06 2005CHROMAT_FILE: MSMg01no073_o08.g1 PHD_FILE: MSMg01no073_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCG
CGGAATTCTCTTTGTCCTGTGTGGTGATTTGAATAAAATAACCCCCATAG
CGTAGGGAATGTCTCTACTACGAGGTGTGACCTTGTTGGAGAAACTGTCA
CTGGGGGTAGACTTTGAGGTCTTAGATGGTCAAGTTAGGTTTAGTGTGGC
ATTCCCTTCCTGATGCCTTTAGATCCGGATGTAGAACTCTCAGCTACCTC
TCCAGCACCAGGTTGTCTGCTTGCTGCCTTGATTCCTGACTTGATGACAT
TGTACTAAACCTCTGAACTGTATGTGAGCCTCAATGAAATGTTTTCCTTT
ATAAGATTTGCCATGGTCAGGGTGTGTCTTTTCATCCACAATTGCCCAAC
AAAGACAGGTTGCTTATACTCTCCTGAAGTATGGATTTAGACACTGGTTT
AAACACATAGGAACATATCTGTGGACTTCCACTGATACCAGTCTGAGTTA
TACAGTTAATTGTATCAAGACTCCTTGTGTATGTGTGTGTCAGAGGCAGG
TAGATACAGTATATACTCGTGTTAGGTTTTTCTCCTATTTCACCATATAG
AGAATTGATTTTCCCGTTCGTTTATACCTCTATGACCCGTTATGTGTGTG
ATGTATTGATATTCTTGCGTCGTCGTTCCTTGCGTCTTATTCCTTTCTTT
GACCT
CTTCAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTATAGCCAGGGCTACACTGAGA
AACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAGTTCAAAGAACATGT
TGGAGGGCATTTGTAATGTTTGCAAAAGCAAATGCCATCATACATTCATA
CCAAACTCCACCACCCCTGGAGTTATACTTCTGCTCAGTTCCTGTGTGCT
ACTCTCTAGGCAAAGACCTGGAAGCCACTTCCCTGCTCAGTTCCCTATGT
ATTCTAGTTTGCTCTCTGCTGCTGTGATAAATACCATGACCAATAGCAAC
CAGGGAAAGGGTATTTTATCTTACAACTCCCAGGTCACCAAACATTCATA
AGGAATGTCAGTTCATGGATTCTAGGCTAGAACTCGGAATCAAGATTCGA
AGCTAAGATACTCGTTTTGCTGTTTTGTCCCTGACAGCTTGCTTATCTTG
CTTTCCTATACTACCTAATTACCTCTGCCCAGATGTAGTACAGTCCACAG
TGTGTTGGTCTTCCCATACCATCTATTAACCAAGAAAACGACCCATAGAC
TTGCCCATTATTATTCCTCTCAAAGGACCTCATTTTGTATGCACCTCTCT
CCATCTATCCTTCTAATAACCCGTCATGGTTAGTTAATTGGCACCTTTAC
CGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_o08.g1 MSMg01no073_o08.g1 CHROMAT_FILE:
MSMg01no073_o08.g1 PHD_FILE: MSMg01no073_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:06 2005
         (173 letters)



>mm_chr9_113017961_113018533
          Length = 573

 Score =  310 bits (160), Expect = 4e-89
 Identities = 169/172 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtaatgtttgcaaaagcaaatgccatcatacattcataccaaactccaccacccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtaatgtttgcaaaagcaaatgccatcatacattcataccaaactccaccacccctg 260

                                                                       
Query: 61  gagttatacttctgctcagttcctgtgtgctactctctaggcaaagacctggaagccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gagttatacttctgctcagttcctgtgtgctactctctaggcaaagacctggaagccgct 320

                                                               
Query: 121 tccctgctcagttccctatgtattctagtttgctctctgctgctgtgataaa 172
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tccctactcagttccctatgtattctagtttgctctctgttgctgtgataaa 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)