BAC Information

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BAC

Clone NameMSMg01-074M13
Chromosome9 (Build37)
Map Location 80,880,536 - 80,880,961
singlet/doubletsinglet
Overlap genenone
Upstream geneSenp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M13.T7 (MSMg01no074_m13.b1)MSMg01-074M13.TJ (MSMg01no074_m13.g1)
ACCAG297757AG297758
length707705
length of high quality
(start - end)
297 (41 - 337)426 (124 - 549)
definitionCHROMAT_FILE: MSMg01no074_m13.b1 PHD_FILE: MSMg01no074_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005CHROMAT_FILE: MSMg01no074_m13.g1 PHD_FILE: MSMg01no074_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTCCTCCTGATGTCCCACCTTTTATTTCCTGCCTAAGCCACAGGCTA
TAGGCTTTTTAATTGACCGGTGATGCATCCATACAACATACAAGATATTC
TTTGTACAGGTACGATTGCCTTGGGATGCCTCTGCATGGTGCAACCTATG
GCTCCAGCCACATATGTAGCAGAGGATAGCCTTGTCAGACATCAATGGGA
GGAGGGACCCTTGGTTCTATGTTAAAGAAAATTTCCCTACATTTTTTTAA
AAGTCCAGTTCTAGTGTTTATTTTTCTGACAATAGCAAACATGGTGTATA
CGGATTCAAAGGCGCAATATGAGTCCCCAGTGGGCAATAGCTGAATTTCT
TCTTGCTGCCTTACCCTCACTGTGCAAAAGGATTCAGTTAAATAGCCATC
AGTGTTGTCCTTATACTTTCTGAAACATTCCTAGACACCTTGACAAGATC
CTAGCTGATCTGTCCTAGGTCCTGTCAATGCCCTCTCTATTAGATAGCTA
GCATACACTTTTTGTTATTCTAGCACTCCCCGCGCCCCTTCATAACCATC
CCCCCTACAGCACAGAATACTTTTACCTTTGATTGCCGTCCCATGTCCCC
CTTCCTTTTTGTTCGCTCGTTTTTACACCCCTCTCACTGCTCATTTCACC
TTTCCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAAAATTTGTGCATATAGGCTGGGAAT
AACACTGTACAGAAAACTACGCGAAGTTCCTGTTTGATAATATCCAGTGC
TTCTTGGTGACTGCACTGAGTTCTTCATAGATAGACTTGTTTTAAATTAT
AATCAGTACATCACTTTCATCTGACACTTTATGGCTAAACCTAGAGCTTT
CTCTGAATTGTGAAAGCAGGAGCTGTGTCACCTATAATAAATAGCAGCTT
ATTGACTCTAATCTACTGCCACCAAAACACCAGGAGCAGAAAAGGAATAA
AACATGGTGACCATATATCACCAGTTGAGAAGTACCATGGAAACAAAAGG
ACAGTGAAGGCGATTGGGTTTCACCACTCAGAGGAATGAGTACTCAAGCT
TTGCTGGTGGTTAAATTATGTTTCTATTAAATGCATCCCAAACCTAATCT
ACATGAGATTTTTGTGCAGCTTCTTGCTGCCTTGAGTCCATTTTATGAAC
ATTAGTGTGAAAATGCTGCCATTTCTTTAGGCCCGTATTTAAACGCATGC
CCTACTTGAAGCTTTCTTTGCTGCCAGATCCAAGAATGACCTTGATCTCT
ACCTTTTACGCATTTTCTATTCCACACATTCCTCGTTCCGCACCCTACCG
TTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m13.g1 MSMg01no074_m13.g1 CHROMAT_FILE:
MSMg01no074_m13.g1 PHD_FILE: MSMg01no074_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:16 2005
         (426 letters)



>mm_chr9_80880336_80881161
          Length = 826

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttcctgtttgataatatccagtgcttcttggtgactgcactgagttcttcatagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagttcctgtttgataatatccagtgcttcttggtgactgcactgagttcttcatagata 567

                                                                       
Query: 61  gacttgttttaaattataatcagtacatcactttcatctgacactttatggctaaaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gacttgttttaaattataatcagtacatcactttcatctgacactttatggctaaaccta 507

                                                                       
Query: 121 gagctttctctgaattgtgaaagcaggagctgtgtcacctataataaatagcagcttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagctttctctgaattgtgaaagcaggagctgtgtcacctataataaatagcagcttatt 447

                                                                       
Query: 181 gactctaatctactgccaccaaaacaccaggagcagaaaaggaataaaacatggtgacca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 gactctaatctactgccaccaaaacaccaggagcagaaaaggaataaaacatggggacca 387

                                                                       
Query: 241 tatatcaccagttgagaagtaccatggaaacaaaaggacagtgaaggcgattgggtttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatatcaccagttgagaagtaccatggaaacaaaaggacagtgaaggcgattgggtttca 327

                                                                       
Query: 301 ccactcagaggaatgagtactcaagctttgctggtggttaaattatgtttctattaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccactcagaggaatgagtactcaagctttgctggtggttaaattatgtttctattaaatg 267

                                                                       
Query: 361 catcccaaacctaatctacatgagatttttgtgcagcttcttgctgccttgagtccattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catcccaaacctaatctacatgagatttttgtgcagcttcttgctgccttgagtccattt 207

                 
Query: 421 tatgaa 426
           ||||||
Sbjct: 206 tatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)