Query= MSMg01no074_n05.b1 MSMg01no074_n05.b1 CHROMAT_FILE:
MSMg01no074_n05.b1 PHD_FILE: MSMg01no074_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:19 2005
(300 letters)
>mm_chr9_64045726_64046425
Length = 700
Score = 559 bits (289), Expect = e-164
Identities = 295/297 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaaatcccaacctactcttaggttgccctgctgttatgacagcgacaatgctgt 63
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 ggaattcaaatcccaaactactcttaggttgccctgctgttatgacagtgacaatgctgt 441
Query: 64 ggtcttctgctccctgttcccagtaccctcccactgctactgggaggagcaaagggagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtcttctgctccctgttcccagtaccctcccactgctactgggaggagcaaagggagag 381
Query: 124 tgttcaaaagatctgggccttcagctttggcttgcccaaactcctagcctgccccagctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttcaaaagatctgggccttcagctttggcttgcccaaactcctagcctgccccagctg 321
Query: 184 tcctcagctgtcttcagctgtcctcgttacatccattctttctcaggaagtggaacctgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcctcagctgtcttcagctgtcctcgttacatccattctttctcaggaagtggaacctgg 261
Query: 244 tgggaaactagaacctttcatcagcagtctagggaaagtttaggtgggaaaaaatta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggaaactagaacctttcatcagcagtctagggaaagtttaggtgggaaaaaatta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_n05.g1 MSMg01no074_n05.g1 CHROMAT_FILE:
MSMg01no074_n05.g1 PHD_FILE: MSMg01no074_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:19 2005
(371 letters)
>mm_chr9_63945691_63946462
Length = 772
Score = 673 bits (348), Expect = 0.0
Identities = 366/372 (98%), Gaps = 1/372 (0%)
Strand = Plus / Plus
Query: 1 tcctttt-aacagtacagcaaacacactgttacagtgcccaggaacttcatggctgtaag 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttttaaacagtacagcaaacacactgttacagtgcccaggaacttcatggctgtaag 260
Query: 60 atcaggcttcttacatatgtagctctatcagactaagggtgagaagatctgtcaactgac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaggcttcttacatatgtagctctatcagactaagggtgagaagatctgtcaactgac 320
Query: 120 tcaagaacggtgcaggggagaagacaggggcacaaagtgctaatacattgatttcatggc 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagaacggtgcaggggagaagacagaggcacaaagtgctaatacattgatttcatggc 380
Query: 180 ttacaaaatcacagagccatgtaaaatcccagcatgtcgccctcctgtctccctcaagcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttacaaaatcacagagccatgtaaaatcccagcatgtcgccctcctgtctccctcaggcc 440
Query: 240 ccagggcttccctgacgctttgaatccaggccttacgagtggcctggaccttccacgaga 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 441 ccagggcttccctgacgctttgaatccaggccttacgtgtggcctggaccttccacaaga 500
Query: 300 gcttggggacctctgtccccaagctttaggctgatgttctgctgagcctggccttgatgg 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gcttggggacctctgtccccaagctttaggctgatgttctgctgggcctggccttgatgg 560
Query: 360 cccttgcagggt 371
||||||||||||
Sbjct: 561 cccttgcagggt 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space: 276206
Effective search space used: 276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
